(data stored in SCRATCH zone)

SWISSPROT: A5GR25_SYNR3

ID   A5GR25_SYNR3            Unreviewed;       280 AA.
AC   A5GR25;
DT   12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT   12-JUN-2007, sequence version 1.
DT   08-MAY-2019, entry version 80.
DE   SubName: Full=Alternative RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CAK27334.1};
GN   Name=rpoD {ECO:0000313|EMBL:CAK27334.1};
GN   OrderedLocusNames=SynRCC307_0431 {ECO:0000313|EMBL:CAK27334.1};
OS   Synechococcus sp. (strain RCC307).
OC   Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae;
OC   Synechococcus.
OX   NCBI_TaxID=316278 {ECO:0000313|EMBL:CAK27334.1, ECO:0000313|Proteomes:UP000001115};
RN   [1] {ECO:0000313|Proteomes:UP000001115}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RCC307 {ECO:0000313|Proteomes:UP000001115};
RG   Genoscope;
RL   Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|SAAS:SAAS00554769}.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CT978603; CAK27334.1; -; Genomic_DNA.
DR   RefSeq; WP_011934849.1; NC_009482.1.
DR   STRING; 316278.SynRCC307_0431; -.
DR   EnsemblBacteria; CAK27334; CAK27334; SynRCC307_0431.
DR   KEGG; syr:SynRCC307_0431; -.
DR   eggNOG; COG0568; LUCA.
DR   HOGENOM; HOG000270273; -.
DR   KO; K03086; -.
DR   OMA; WIRQEIT; -.
DR   OrthoDB; 1565734at2; -.
DR   BioCyc; SSP316278:G1GJL-429-MONOMER; -.
DR   Proteomes; UP000001115; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
PE   3: Inferred from homology;
DR   PRODOM; A5GR25.
DR   SWISS-2DPAGE; A5GR25.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001115};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001115};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       84     97       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00715}.
FT   COILED       19     39       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   280 AA;  32132 MW;  4AE3ADD877A3F9F8 CRC64;
     MAEPVRAYLE QIGRYALLRP EQEVELARLV QRAQQLEQQL QLSPTEQREL RRGRRARERM
     IQANLRLVVT VAKTYQGRGL DLMDLVQEGS LGLIRAVEKF DPTLGYRFST YAWNWIRQAI
     SRGLETKGRT LRLPIHVTQQ LRALRRAHER LWQQGLSTDL VAVAAEAGVD LKAASLALRM
     APGTLSLDTP AAGSESDLLQ LLPSAEPSPL DEAERHDGWE RMGRQLRHLP ERDQQVLQWR
     YLTPERQKLS VVGEQLGCSR ERARQIEQRA LLRLRLRMAS
//

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