(data stored in SCRATCH zone)

SWISSPROT: A8FP91_SHESH

ID   A8FP91_SHESH            Unreviewed;       240 AA.
AC   A8FP91;
DT   13-NOV-2007, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2007, sequence version 1.
DT   07-JUN-2017, entry version 70.
DE   SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family {ECO:0000313|EMBL:ABV34664.1};
GN   OrderedLocusNames=Ssed_0051 {ECO:0000313|EMBL:ABV34664.1};
OS   Shewanella sediminis (strain HAW-EB3).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=425104 {ECO:0000313|EMBL:ABV34664.1, ECO:0000313|Proteomes:UP000002015};
RN   [1] {ECO:0000313|EMBL:ABV34664.1, ECO:0000313|Proteomes:UP000002015}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HAW-EB3 {ECO:0000313|EMBL:ABV34664.1,
RC   ECO:0000313|Proteomes:UP000002015};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA   Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D.,
RA   Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Kyrpides N., Kim E., Zhao J.-S., Richardson P.;
RT   "Complete sequence of Shewanella sediminis HAW-EB3.";
RL   Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP000821; ABV34664.1; -; Genomic_DNA.
DR   RefSeq; WP_012004190.1; NC_009831.1.
DR   ProteinModelPortal; A8FP91; -.
DR   STRING; 425104.Ssed_0051; -.
DR   EnsemblBacteria; ABV34664; ABV34664; Ssed_0051.
DR   KEGG; sse:Ssed_0051; -.
DR   eggNOG; ENOG4108WHT; Bacteria.
DR   eggNOG; COG1191; LUCA.
DR   HOGENOM; HOG000270271; -.
DR   KO; K02405; -.
DR   OMA; IRDKTWS; -.
DR   OrthoDB; POG091H02NW; -.
DR   BioCyc; SSED425104:GH7Q-54-MONOMER; -.
DR   Proteomes; UP000002015; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR012845; RNA_pol_sigma_FliA_WhiG.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 2.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02479; FliA_WhiG; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; A8FP91.
DR   SWISS-2DPAGE; A8FP91.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002015};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN      205    231       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00716}.
SQ   SEQUENCE   240 AA;  27823 MW;  44418C191596F66A CRC64;
     MNSGQLAYQE ASDEQVPNRL SENQVMSQYL PLVKRSISQL RSHCGTVLAI EDMEQIGMMA
     LLESSRRYPG EYDNGFISYA GQRIRGAILD ELRRQDWRPR PVRQQAHELN DTVRKLTRLL
     GREPSDIEVA EAMGLNREEY RERLYASQSE SMKSLDDMLS VGAHFPDKTN VIEQFSVQKT
     LIKAISKLSK REQLILSLYY QHELNLKEIA GTLGLTETRI CQLHKQAVKH LQEIYQQWER
//

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