(data stored in SCRATCH zone)

SWISSPROT: A8FPR2_SHESH

ID   A8FPR2_SHESH            Unreviewed;       285 AA.
AC   A8FPR2;
DT   13-NOV-2007, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2007, sequence version 1.
DT   30-AUG-2017, entry version 76.
DE   RecName: Full=RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961};
DE   AltName: Full=RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961};
GN   Name=rpoH {ECO:0000256|HAMAP-Rule:MF_00961};
GN   OrderedLocusNames=Ssed_0222 {ECO:0000313|EMBL:ABV34835.1};
OS   Shewanella sediminis (strain HAW-EB3).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=425104 {ECO:0000313|EMBL:ABV34835.1, ECO:0000313|Proteomes:UP000002015};
RN   [1] {ECO:0000313|EMBL:ABV34835.1, ECO:0000313|Proteomes:UP000002015}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HAW-EB3 {ECO:0000313|EMBL:ABV34835.1,
RC   ECO:0000313|Proteomes:UP000002015};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA   Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D.,
RA   Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Kyrpides N., Kim E., Zhao J.-S., Richardson P.;
RT   "Complete sequence of Shewanella sediminis HAW-EB3.";
RL   Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. This sigma factor is involved in regulation of
CC       expression of heat shock genes. {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- SUBUNIT: Interacts with the RNA polymerase core enzyme.
CC       {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. RpoH subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation
CC       of feature annotation. {ECO:0000256|HAMAP-Rule:MF_00961}.
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DR   EMBL; CP000821; ABV34835.1; -; Genomic_DNA.
DR   RefSeq; WP_012004361.1; NC_009831.1.
DR   ProteinModelPortal; A8FPR2; -.
DR   STRING; 425104.Ssed_0222; -.
DR   EnsemblBacteria; ABV34835; ABV34835; Ssed_0222.
DR   KEGG; sse:Ssed_0222; -.
DR   eggNOG; ENOG4105DEK; Bacteria.
DR   eggNOG; COG0568; LUCA.
DR   HOGENOM; HOG000270269; -.
DR   KO; K03089; -.
DR   OMA; YQRWLAE; -.
DR   OrthoDB; POG091H04HS; -.
DR   Proteomes; UP000002015; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009408; P:response to heat; IEA:InterPro.
DR   GO; GO:0001123; P:transcription initiation from bacterial-type RNA polymerase promoter; IEA:UniProtKB-HAMAP.
DR   Gene3D; 1.10.10.10; -; 1.
DR   HAMAP; MF_00961; Sigma70_RpoH; 1.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR012759; RNA_pol_sigma_RpoH_proteobac.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02392; rpoH_proteo; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; A8FPR2.
DR   SWISS-2DPAGE; A8FPR2.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002015};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961};
KW   DNA-binding {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611263};
KW   Sigma factor {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611278};
KW   Stress response {ECO:0000256|HAMAP-Rule:MF_00961};
KW   Transcription {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00961,
KW   ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       80     93       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00715}.
FT   DOMAIN      253    279       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00716}.
FT   DNA_BIND    254    273       H-T-H motif. {ECO:0000256|HAMAP-Rule:
FT                                MF_00961}.
FT   REGION       56    125       Sigma-70 factor domain-2.
FT                                {ECO:0000256|HAMAP-Rule:MF_00961}.
FT   MOTIF        80     83       Interaction with polymerase core subunit
FT                                RpoC. {ECO:0000256|HAMAP-Rule:MF_00961}.
SQ   SEQUENCE   285 AA;  32219 MW;  778F97511EECD356 CRC64;
     MTNQTQSMAL TVPHGSGSLE AYVHSAHNIS MLQPEQEYEL AKRLQETGDL QAAKQLIMSH
     LRFVVHVAKG YSGYGLPQAD LIQEGNIGLM KAVKRFDPNV GVRLVSFAVH WIKAEIHEYV
     LKNWRIVKVA TTKAQRKLFF NLRKSKKRLG WFSDEEVGMV ADNLGVSKAD VTEMESRMAA
     QDPAFDLASD NDDDHDFAPM HYLEDHSSDL ASQVENDNLE ASNQARLLSA IKTLDERSQH
     ILQARWLNED KTTLQELAAT YQVSAERIRQ LEKNAMNKLK GRMEA
//

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