(data stored in SCRATCH zone)

SWISSPROT: A8FPW0_SHESH

ID   A8FPW0_SHESH            Unreviewed;       598 AA.
AC   A8FPW0;
DT   13-NOV-2007, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2007, sequence version 1.
DT   07-JUN-2017, entry version 76.
DE   SubName: Full=GAF modulated sigma54 specific transcriptional regulator, fis family {ECO:0000313|EMBL:ABV34883.1};
GN   OrderedLocusNames=Ssed_0270 {ECO:0000313|EMBL:ABV34883.1};
OS   Shewanella sediminis (strain HAW-EB3).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=425104 {ECO:0000313|EMBL:ABV34883.1, ECO:0000313|Proteomes:UP000002015};
RN   [1] {ECO:0000313|EMBL:ABV34883.1, ECO:0000313|Proteomes:UP000002015}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HAW-EB3 {ECO:0000313|EMBL:ABV34883.1,
RC   ECO:0000313|Proteomes:UP000002015};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA   Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D.,
RA   Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Kyrpides N., Kim E., Zhao J.-S., Richardson P.;
RT   "Complete sequence of Shewanella sediminis HAW-EB3.";
RL   Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP000821; ABV34883.1; -; Genomic_DNA.
DR   RefSeq; WP_012004409.1; NC_009831.1.
DR   ProteinModelPortal; A8FPW0; -.
DR   STRING; 425104.Ssed_0270; -.
DR   EnsemblBacteria; ABV34883; ABV34883; Ssed_0270.
DR   KEGG; sse:Ssed_0270; -.
DR   eggNOG; ENOG4108JU9; Bacteria.
DR   eggNOG; COG3284; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   OMA; HTLGMVK; -.
DR   OrthoDB; POG091H03UM; -.
DR   BioCyc; SSED425104:GH7Q-273-MONOMER; -.
DR   Proteomes; UP000002015; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   CDD; cd00130; PAS; 1.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF_dom-like.
DR   InterPro; IPR009057; Homeobox-like.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF01590; GAF; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00989; PAS; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; A8FPW0.
DR   SWISS-2DPAGE; A8FPW0.
KW   ATP-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110192};
KW   Complete proteome {ECO:0000313|Proteomes:UP000002015};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00814512};
KW   Nucleotide-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110083};
KW   Transcription {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN      292    517       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   NP_BIND     320    327       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
FT   NP_BIND     384    393       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
SQ   SEQUENCE   598 AA;  66924 MW;  6EFAF7EB33E0A5DE CRC64;
     MASKLQLQHW LSDSWQRSVG AGLSESQPPE ELRLNSSAIR QKHEQHGQLI DLVQSHALPL
     FNQLMAHTSS RLILSDREGY VLSHWGVDKY SDRLANVALD IGVNWQEEHK GTNAIGTALT
     ARQAVSVVGD QHFIRQHRFM SCTACPIFSP SGEMIAAIDI TSEQQRHTQQ TLLLVSSLAQ
     QVETALLCHL PDSHYRINLA SQPSLINSGW QGILVADNDG KILGCNPMAK QLLGSARVGD
     AIDQHLGRDW SHNERIQKHE NLHLQTQPLK PARIGVGQSR SRSNRPVSQL GVKFREPKLE
     RAWQHANKVL SKNIPLLITG ETGVGKDQFV KQLHAQSRRR EQPIVAVNCA ALPDNLVESE
     LFGYHSGAFT GANRAGYIGK IRQADGGFLF LDEIGEMSLG AQSRLLRVLQ EREVIPVGSN
     NVYKVDIQVI GATHTDLKQR VADGLFRQDL YYRLNGLQIR LPPLRQRSDI ERIIQKLHNK
     HKAHEQNLCG RLLSQLCHYQ WPGNLRELDN FMQVASIMAE GESELNWSAL PDELQTQLMD
     GKAIPPTDSK PMELSDTVDA NVVAAYRRFE GNVSQSAKHL GVSRNTLYRK LKRLGLKS
//

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