(data stored in SCRATCH zone)

SWISSPROT: A8FQ36_SHESH

ID   A8FQ36_SHESH            Unreviewed;       518 AA.
AC   A8FQ36;
DT   13-NOV-2007, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2007, sequence version 1.
DT   07-JUN-2017, entry version 73.
DE   SubName: Full=Formate hydrogenlyase transcriptional activator, putative {ECO:0000313|EMBL:ABV34959.1};
GN   OrderedLocusNames=Ssed_0346 {ECO:0000313|EMBL:ABV34959.1};
OS   Shewanella sediminis (strain HAW-EB3).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=425104 {ECO:0000313|EMBL:ABV34959.1, ECO:0000313|Proteomes:UP000002015};
RN   [1] {ECO:0000313|EMBL:ABV34959.1, ECO:0000313|Proteomes:UP000002015}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HAW-EB3 {ECO:0000313|EMBL:ABV34959.1,
RC   ECO:0000313|Proteomes:UP000002015};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA   Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D.,
RA   Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Kyrpides N., Kim E., Zhao J.-S., Richardson P.;
RT   "Complete sequence of Shewanella sediminis HAW-EB3.";
RL   Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP000821; ABV34959.1; -; Genomic_DNA.
DR   RefSeq; WP_012140697.1; NC_009831.1.
DR   ProteinModelPortal; A8FQ36; -.
DR   STRING; 425104.Ssed_0346; -.
DR   EnsemblBacteria; ABV34959; ABV34959; Ssed_0346.
DR   KEGG; sse:Ssed_0346; -.
DR   eggNOG; ENOG4108JUA; Bacteria.
DR   eggNOG; COG3604; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   OMA; ITRVGGH; -.
DR   OrthoDB; POG091H03UM; -.
DR   BioCyc; SSED425104:GH7Q-355-MONOMER; -.
DR   Proteomes; UP000002015; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR029016; GAF_dom-like.
DR   InterPro; IPR009057; Homeobox-like.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF55781; SSF55781; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; A8FQ36.
DR   SWISS-2DPAGE; A8FQ36.
KW   ATP-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110192};
KW   Complete proteome {ECO:0000313|Proteomes:UP000002015};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00814512};
KW   Lyase {ECO:0000313|EMBL:ABV34959.1};
KW   Nucleotide-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110083};
KW   Transcription {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN      200    430       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   NP_BIND     228    235       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
FT   NP_BIND     291    300       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
SQ   SEQUENCE   518 AA;  58280 MW;  47162E87549F7559 CRC64;
     MIFNGSHSEE SMEKFYYKAT QCLCSSLQLE ESLQSYFDYI KSHLPIDGIY LNIYRPDFSD
     IQFIAQVNDQ QSSTLDRRIP ISNEMCEALQ DLDRPIIRIV NDIELDTVTQ FVAPQVIPEI
     KSVILLRMVS GNTHLGVVGF YAKQAGVFRP RHVDMLEPHM QTFSLITAFN LKGRNLLRAN
     EALAEQNQSL KRTLNICNGV VGAHSGLKHV MQQVESIAKL NTTVLMLGET GCGKEVIANA
     IHELSLRANK PFIKVNCGAI PESLIDSEMF GYERGAFTGA ESRKAGYFEQ ANGGTIFLDE
     IGELPLSVQV RLLRVLQNST ITRVGGHDSV QLDIRVIAAT HRNLKAMVST GEFREDLWYR
     LAIFPIEIPS LRQRRTDIPL LVQHFIEMLS AKFNQDQLPR VAPEQLAILS QYHWPGNVRE
     LINVLERAII QHPKGPLNFD FLVPEVKAEH KEKRGETIIV DPSHATDKLV PLETMTRKYI
     EHALRVTGGK LYGPGGAAQL LDINPNTMRS KMKKLGIC
//

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