(data stored in SCRATCH zone)

SWISSPROT: A8LCH1_FRASN

ID   A8LCH1_FRASN            Unreviewed;       266 AA.
AC   A8LCH1;
DT   04-DEC-2007, integrated into UniProtKB/TrEMBL.
DT   04-DEC-2007, sequence version 1.
DT   08-MAY-2019, entry version 64.
DE   SubName: Full=Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABW09610.1};
GN   OrderedLocusNames=Franean1_0143 {ECO:0000313|EMBL:ABW09610.1};
OS   Frankia sp. (strain EAN1pec).
OC   Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.
OX   NCBI_TaxID=298653 {ECO:0000313|EMBL:ABW09610.1, ECO:0000313|Proteomes:UP000001313};
RN   [1] {ECO:0000313|Proteomes:UP000001313}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EAN1pec {ECO:0000313|Proteomes:UP000001313};
RX   PubMed=17151343; DOI=10.1101/gr.5798407;
RA   Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N.,
RA   Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N.,
RA   Couloux A., Cournoyer B., Cruveiller S., Daubin V., Demange N.,
RA   Francino M.P., Goltsman E., Huang Y., Kopp O.R., Labarre L.,
RA   Lapidus A., Lavire C., Marechal J., Martinez M., Mastronunzio J.E.,
RA   Mullin B.C., Niemann J., Pujic P., Rawnsley T., Rouy Z.,
RA   Schenowitz C., Sellstedt A., Tavares F., Tomkins J.P., Vallenet D.,
RA   Valverde C., Wall L.G., Wang Y., Medigue C., Benson D.R.;
RT   "Genome characteristics of facultatively symbiotic Frankia sp. strains
RT   reflect host range and host plant biogeography.";
RL   Genome Res. 17:7-15(2007).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000820; ABW09610.1; -; Genomic_DNA.
DR   RefSeq; WP_012157587.1; NC_009921.1.
DR   STRING; 298653.Franean1_0143; -.
DR   EnsemblBacteria; ABW09610; ABW09610; Franean1_0143.
DR   KEGG; fre:Franean1_0143; -.
DR   eggNOG; ENOG4105XVM; Bacteria.
DR   eggNOG; ENOG41125IM; LUCA.
DR   HOGENOM; HOG000161264; -.
DR   OMA; KQHGRIR; -.
DR   OrthoDB; 2047542at2; -.
DR   BioCyc; FSP298653:G1G9X-141-MONOMER; -.
DR   Proteomes; UP000001313; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR001647; HTH_TetR.
DR   InterPro; IPR036271; Tet_transcr_reg_TetR-rel_C_sf.
DR   Pfam; PF00440; TetR_N; 1.
DR   PRINTS; PR00455; HTHTETR.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF48498; SSF48498; 1.
DR   PROSITE; PS50977; HTH_TETR_2; 1.
PE   4: Predicted;
DR   PRODOM; A8LCH1.
DR   SWISS-2DPAGE; A8LCH1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001313};
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00335,
KW   ECO:0000256|SAAS:SAAS00132209};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001313};
KW   Transcription {ECO:0000256|SAAS:SAAS00131596};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00132066}.
FT   DOMAIN       67    126       HTH tetR-type. {ECO:0000259|PROSITE:
FT                                PS50977}.
FT   DNA_BIND     89    108       H-T-H motif. {ECO:0000256|PROSITE-
FT                                ProRule:PRU00335}.
SQ   SEQUENCE   266 AA;  28971 MW;  1C79AC555B63376F CRC64;
     MPGPVSWAPG NGRMGRPRAE PVFSRRAGAE TAPARHLSSI PVPPGPARAR PVSRPPGSPR
     PLRCDAERNR ERVLVAAREL FVEQGLDVGV DEIVKRAGVG MGTLYRRFPN KDALIEAILG
     TVVDHLRSIA EDVLATEPPT VALRSFFVRS ITTEVCQWAF LSSRLWRGRT NELLFADVVP
     LIGEMFTQAQ QAGAVRPDVV LSDLIVLVRS MRVVLDLTDG FAPEVWRRHL DLLLDGLRPC
     SGNAVLDVGP MPFDALAISA AARPLV
//

If you have problems or comments...

PBIL Back to PBIL home page