(data stored in ACNUC9543 zone)

SWISSPROT: A8XFV1_CAEBR

ID   A8XFV1_CAEBR            Unreviewed;       859 AA.
AC   A8XFV1;
DT   15-JAN-2008, integrated into UniProtKB/TrEMBL.
DT   16-DEC-2008, sequence version 2.
DT   08-MAY-2019, entry version 80.
DE   SubName: Full=Protein CBG12480 {ECO:0000313|EMBL:CAP31455.2};
GN   ORFNames=CBG12480 {ECO:0000313|EMBL:CAP31455.2,
GN   ECO:0000313|WormBase:CBG12480}, CBG_12480
GN   {ECO:0000313|EMBL:CAP31455.2};
OS   Caenorhabditis briggsae.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC   Caenorhabditis.
OX   NCBI_TaxID=6238 {ECO:0000313|EMBL:CAP31455.2, ECO:0000313|Proteomes:UP000008549};
RN   [1] {ECO:0000313|EMBL:CAP31455.2, ECO:0000313|Proteomes:UP000008549}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AF16 {ECO:0000313|EMBL:CAP31455.2,
RC   ECO:0000313|Proteomes:UP000008549};
RX   PubMed=14624247; DOI=10.1371/journal.pbio.0000045;
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N.,
RA   Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R.,
RA   Waterston R.H.;
RT   "The genome sequence of Caenorhabditis briggsae: a platform for
RT   comparative genomics.";
RL   PLoS Biol. 1:166-192(2003).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; HE600940; CAP31455.2; -; Genomic_DNA.
DR   STRING; 6238.CBG12480; -.
DR   WormBase; CBG12480; CBP38262; WBGene00033425; -.
DR   eggNOG; KOG0922; Eukaryota.
DR   eggNOG; COG1643; LUCA.
DR   HOGENOM; HOG000175261; -.
DR   InParanoid; A8XFV1; -.
DR   OMA; MINEQHL; -.
DR   OrthoDB; 354219at2759; -.
DR   Proteomes; UP000008549; Chromosome I.
DR   GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0034459; F:ATP-dependent 3'-5' RNA helicase activity; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0045943; P:positive regulation of transcription by RNA polymerase I; IBA:GO_Central.
DR   CDD; cd00079; HELICc; 1.
DR   Gene3D; 1.10.10.2130; -; 1.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR042035; DEAH_win-hel_dom.
DR   InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR   InterPro; IPR011709; DUF1605.
DR   InterPro; IPR007502; Helicase-assoc_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF04408; HA2; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF07717; OB_NTP_bind; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00847; HA2; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
PE   4: Predicted;
DR   PRODOM; A8XFV1.
DR   SWISS-2DPAGE; A8XFV1.
KW   ATP-binding {ECO:0000256|SAAS:SAAS01176619};
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000008549};
KW   Hydrolase {ECO:0000256|SAAS:SAAS01176622};
KW   Nucleotide-binding {ECO:0000256|SAAS:SAAS01176608};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008549}.
FT   DOMAIN      168    335       Helicase ATP-binding.
FT                                {ECO:0000259|PROSITE:PS51192}.
FT   DOMAIN      364    539       Helicase C-terminal.
FT                                {ECO:0000259|PROSITE:PS51194}.
FT   COILED      683    703       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   859 AA;  96632 MW;  14ADD781C7CA7F71 CRC64;
     MKINGKFPAW KKKKRKNNDE KRVKNGTNIV SINGISRQNG GQDPNLAMLS VKKKKRLRKK
     KINGTAKIQM KEELMNSTVQ MTNGVLTKKT NMEMKQIITA SSPPKTKIQS MTPKSVNNNS
     TPISKKPNAA IPSKNAEPKA KNSPREDATY EKFIRPQLPI DVVEQQLMHE LASQETLIVI
     GETGSGKSTQ VPQLCVRAGI AEKGLIAVTE PRRVAAVSLA SRVAVEMGTD LGGTVGYHVR
     FENVTSHRTK IEYMTDGIVL RKALVSPLLD KYSTVIIDEA HERSLHSDVL MCILRKCQAQ
     RRSTDNPLRL IIMSATLQAD KFQAYFDNAK VVLVSGRTFP IEIHHVNPKI NKSFSATDYV
     YNTVICVKHV HLTEPKGHDI LVFLTGSEEI EAVAHQLAEL NGSLPREADF ILPVPLYAAL
     RPEKQREAFQ KTPQGARKVI ISTNIAETSV TIPGIRVVID SGKVKTKRFE ASNRIDVLKV
     HNVSKAQAKQ RAGRAGRDAP GKCYRLYTRE DFQKFDAENM PEILRCNLSA TFLELMKLGM
     KNPHRLGWID PPESQNIDAA LLELTSLGAI RPINSDRSKF VLTEMGDVFC MYPLSPEHAR
     KLKVFRILFQ AQKEGCIMEA IKIVAAMQTD ALFSGGSDSK SDAEVERVRR KFETREGDHI
     TLLKIVLTTN DFFDQLNAKT EADARYNKSN KSLEREYNEA IRKFCNDNMI NEQHLKTGSM
     IEDQLKQIAI EQNVKFSTCG ADLSKIRKAI AVGLFLNSCE YDRQEDRYRL MINPAITVKI
     HPSSALSRSK PAYIVFSELM KTNDLYALQV TLIDADWVRP LITEHKKIRK NHLAETAQRI
     QQIAKVEPKT KKQKLIVTF
//

If you have problems or comments...

PBIL Back to PBIL home page