(data stored in SCRATCH3701 zone)

SWISSPROT: YQGF_RICTY

ID   YQGF_RICTY              Reviewed;         156 AA.
AC   Q68X41;
DT   26-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT   11-OCT-2004, sequence version 1.
DT   11-DEC-2019, entry version 83.
DE   RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000255|HAMAP-Rule:MF_00651};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00651};
GN   OrderedLocusNames=RT0321;
OS   Rickettsia typhi (strain ATCC VR-144 / Wilmington).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
OC   Rickettsiaceae; Rickettsieae; Rickettsia; typhus group.
OX   NCBI_TaxID=257363;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC VR-144 / Wilmington;
RX   PubMed=15317790; DOI=10.1128/jb.186.17.5842-5855.2004;
RA   McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E.,
RA   McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E.,
RA   Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A., Hong C.,
RA   Yu X.-J., Walker D.H., Weinstock G.M.;
RT   "Complete genome sequence of Rickettsia typhi and comparison with sequences
RT   of other Rickettsiae.";
RL   J. Bacteriol. 186:5842-5855(2004).
CC   -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end of
CC       pre-16S rRNA. {ECO:0000255|HAMAP-Rule:MF_00651}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00651}.
CC   -!- SIMILARITY: Belongs to the YqgF nuclease family. {ECO:0000255|HAMAP-
CC       Rule:MF_00651}.
DR   EMBL; AE017197; AAU03801.1; -; Genomic_DNA.
DR   RefSeq; WP_011190785.1; NC_006142.1.
DR   SMR; Q68X41; -.
DR   STRING; 257363.RT0321; -.
DR   EnsemblBacteria; AAU03801; AAU03801; RT0321.
DR   KEGG; rty:RT0321; -.
DR   eggNOG; ENOG4107ZJC; Bacteria.
DR   eggNOG; COG0816; LUCA.
DR   HOGENOM; HOG000016953; -.
DR   KO; K07447; -.
DR   OMA; DERMSTV; -.
DR   OrthoDB; 2075502at2; -.
DR   BioCyc; RTYP257363:G1G0L-326-MONOMER; -.
DR   Proteomes; UP000000604; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.420.140; -; 1.
DR   HAMAP; MF_00651; Nuclease_YqgF; 1.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR005227; YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR33317; PTHR33317; 1.
DR   Pfam; PF03652; RuvX; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   TIGRFAMs; TIGR00250; RNAse_H_YqgF; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q68X41.
DR   SWISS-2DPAGE; Q68X41.
KW   Cytoplasm; Hydrolase; Nuclease; Ribosome biogenesis.
FT   CHAIN           1..156
FT                   /note="Putative pre-16S rRNA nuclease"
FT                   /id="PRO_0000172130"
SQ   SEQUENCE   156 AA;  17422 MW;  A1131FC10B9DFEE5 CRC64;
     MIIKNLQEFY RLLIPNEPLI AIDYGSKKIG VALSDQALAI AMPLNTITEL NQRVIITSLL
     NIIEKYQVCG IVIGLPIDMS GGVTKQTNIV MKFADKLKQS VSLPIYLQDE RLTTKSANNF
     LKSFGIKRKD RNNNDDAVAA SMILEIVLNA IKRFNL
//

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