(data stored in SCRATCH3701 zone)

SWISSPROT: RL4_RICTY

ID   RL4_RICTY               Reviewed;         207 AA.
AC   Q68W79;
DT   27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
DT   11-OCT-2004, sequence version 1.
DT   11-DEC-2019, entry version 80.
DE   RecName: Full=50S ribosomal protein L4 {ECO:0000255|HAMAP-Rule:MF_01328};
GN   Name=rplD {ECO:0000255|HAMAP-Rule:MF_01328}; OrderedLocusNames=RT0650;
OS   Rickettsia typhi (strain ATCC VR-144 / Wilmington).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
OC   Rickettsiaceae; Rickettsieae; Rickettsia; typhus group.
OX   NCBI_TaxID=257363;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC VR-144 / Wilmington;
RX   PubMed=15317790; DOI=10.1128/jb.186.17.5842-5855.2004;
RA   McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E.,
RA   McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E.,
RA   Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A., Hong C.,
RA   Yu X.-J., Walker D.H., Weinstock G.M.;
RT   "Complete genome sequence of Rickettsia typhi and comparison with sequences
RT   of other Rickettsiae.";
RL   J. Bacteriol. 186:5842-5855(2004).
CC   -!- FUNCTION: One of the primary rRNA binding proteins, this protein
CC       initially binds near the 5'-end of the 23S rRNA. It is important during
CC       the early stages of 50S assembly. It makes multiple contacts with
CC       different domains of the 23S rRNA in the assembled 50S subunit and
CC       ribosome. {ECO:0000255|HAMAP-Rule:MF_01328}.
CC   -!- FUNCTION: Forms part of the polypeptide exit tunnel.
CC       {ECO:0000255|HAMAP-Rule:MF_01328}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC       Rule:MF_01328}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL4 family.
CC       {ECO:0000255|HAMAP-Rule:MF_01328}.
DR   EMBL; AE017197; AAU04113.1; -; Genomic_DNA.
DR   RefSeq; WP_011191090.1; NC_006142.1.
DR   SMR; Q68W79; -.
DR   STRING; 257363.RT0650; -.
DR   PRIDE; Q68W79; -.
DR   EnsemblBacteria; AAU04113; AAU04113; RT0650.
DR   KEGG; rty:RT0650; -.
DR   eggNOG; ENOG4106U5A; Bacteria.
DR   eggNOG; COG0088; LUCA.
DR   HOGENOM; HOG000248767; -.
DR   KO; K02926; -.
DR   OMA; PQVHILE; -.
DR   OrthoDB; 1572673at2; -.
DR   BioCyc; RTYP257363:G1G0L-655-MONOMER; -.
DR   Proteomes; UP000000604; Chromosome.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.1370.10; -; 1.
DR   HAMAP; MF_01328_B; Ribosomal_L4_B; 1.
DR   InterPro; IPR002136; Ribosomal_L4/L1e.
DR   InterPro; IPR023574; Ribosomal_L4_dom_sf.
DR   InterPro; IPR013005; Ribosomal_uL4/L1e.
DR   PANTHER; PTHR10746; PTHR10746; 1.
DR   Pfam; PF00573; Ribosomal_L4; 1.
DR   SUPFAM; SSF52166; SSF52166; 1.
DR   TIGRFAMs; TIGR03953; rplD_bact; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q68W79.
DR   SWISS-2DPAGE; Q68W79.
KW   Ribonucleoprotein; Ribosomal protein; RNA-binding; rRNA-binding.
FT   CHAIN           1..207
FT                   /note="50S ribosomal protein L4"
FT                   /id="PRO_0000242431"
SQ   SEQUENCE   207 AA;  23080 MW;  6AFBCE357DCDF3B3 CRC64;
     MKTKILSLAN EEVGEITLNK DIFAVEFIRD DIIKQVIDWQ RAKAMSGNHK TKTVSEVSGT
     TKKPFKQKGT GNARQGSLRS IQMRGGGISH GPKVRSHAIK LPKKVRKLGL IHALSEKCAA
     GKLLIINSLK LEKPKTSVLV NLLNKFQGQS FFIIDGNKVD TNFSLATKNI YNTLIVPQIG
     ANVYDIIRHE YVLLSQEAVS FLEERLR
//

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