(data stored in ACNUC7421 zone)

SWISSPROT: Q5LWU7_RUEPO

ID   Q5LWU7_RUEPO            Unreviewed;       523 AA.
AC   Q5LWU7;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 102.
DE   SubName: Full=Transcriptional regulator RtcR {ECO:0000313|EMBL:AAV93484.1};
GN   Name=rtcR {ECO:0000313|EMBL:AAV93484.1};
GN   OrderedLocusNames=SPO0156 {ECO:0000313|EMBL:AAV93484.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93484.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93484.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93484.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
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DR   EMBL; CP000031; AAV93484.1; -; Genomic_DNA.
DR   RefSeq; WP_011045927.1; NC_003911.12.
DR   STRING; 246200.SPO0156; -.
DR   EnsemblBacteria; AAV93484; AAV93484; SPO0156.
DR   KEGG; sil:SPO0156; -.
DR   eggNOG; ENOG4105CYB; Bacteria.
DR   eggNOG; COG4650; LUCA.
DR   HOGENOM; HOG000145396; -.
DR   KO; K14414; -.
DR   OMA; CWFLLTE; -.
DR   OrthoDB; 123059at2; -.
DR   BioCyc; RPOM246200:G1G48-160-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TIGR.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; ISS:TIGR.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR009715; RtcR.
DR   InterPro; IPR017183; Sigma54_dep_tscrpt_act_RtcR.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   PANTHER; PTHR32071:SF14; PTHR32071:SF14; 1.
DR   Pfam; PF06956; RtcR; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PIRSF; PIRSF037354; Txn_actvtr_RtcR; 1.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; Q5LWU7.
DR   SWISS-2DPAGE; Q5LWU7.
KW   ATP-binding {ECO:0000256|SAAS:SAAS00473007};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00421520};
KW   Nucleotide-binding {ECO:0000256|SAAS:SAAS00473126};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   Transcription {ECO:0000256|SAAS:SAAS00421774};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00421590}.
FT   DOMAIN      178    416       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
SQ   SEQUENCE   523 AA;  59277 MW;  7D53077245F9C421 CRC64;
     MRNVVIGFLG TQLDSGKRKR WKPSVSLCNQ PDFPVDRLEL LYDQKFLRLA ENVRREIEVT
     SPKTEVLLRQ LNLSDPWDFQ EVYGKLFDLA RDYGFDEDRE RYFVHLTTGT HVAQICWFLL
     TESRHVPAKL AQTGPPRDEK DGPGKLDIID LDLSRYNALQ QRFDLLAREY SDLLKGGIET
     KSAAYNAVID RIELVASSSD APILLLGDSG TGKTELAQRI YELKLQRRRV KGRLVQINCA
     TLRGSSALAT LFGQRRSHTG QAGSERSGLL HEASGGVLFL DEVDELGLDE QAALLHAIET
     GRYYPLGSDH EVTSRFQVIA GTSRDPVHLT AEGRFRPDLL ARLNMWSFRL PALRDRREDI
     EANLIFELAR AERELGTQVG FNTDARDLFL RFARDPATLW PGNFRDFGSA IRRLCTLAPR
     GRITRAMVEE EIKGLRTGWQ RAAGDGDHRL LIGILGNQAA EIDPFDRVQL AEVIRVCRTS
     ASLSEAGRRL FAVSRTQRRT TNDADRLRKY LQRFGLEWAM IAE
//

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