(data stored in ACNUC7421 zone)

SWISSPROT: Q5LX22_RUEPO

ID   Q5LX22_RUEPO            Unreviewed;       312 AA.
AC   Q5LX22;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 83.
DE   SubName: Full=Glycerophosphoryl diester phosphodiesterase, putative {ECO:0000313|EMBL:AAV93561.1};
GN   OrderedLocusNames=SPO0236 {ECO:0000313|EMBL:AAV93561.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93561.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93561.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000213|PDB:3L12}
RP   X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.
RG   Joint Center for Structural Genomics (JCSG);
RT   "Crystal structure of Putative glycerophosphoryl diester
RT   phosphodiesterase (YP_165505.1) from Silicibacter pomeroyi DSS-3 at
RT   1.60 A resolution.";
RL   Submitted (DEC-2009) to the PDB data bank.
RN   [3] {ECO:0000313|EMBL:AAV93561.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000031; AAV93561.1; -; Genomic_DNA.
DR   RefSeq; WP_011046003.1; NC_003911.12.
DR   PDB; 3L12; X-ray; 1.60 A; A/B=1-312.
DR   PDBsum; 3L12; -.
DR   SMR; Q5LX22; -.
DR   STRING; 246200.SPO0236; -.
DR   DNASU; 3194627; -.
DR   EnsemblBacteria; AAV93561; AAV93561; SPO0236.
DR   KEGG; sil:SPO0236; -.
DR   eggNOG; ENOG4107UXP; Bacteria.
DR   eggNOG; COG0584; LUCA.
DR   HOGENOM; HOG000004695; -.
DR   KO; K01126; -.
DR   OMA; VVSHDPW; -.
DR   OrthoDB; 1542724at2; -.
DR   BioCyc; RPOM246200:G1G48-241-MONOMER; -.
DR   EvolutionaryTrace; Q5LX22; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR   Gene3D; 3.20.20.190; -; 1.
DR   InterPro; IPR030395; GP_PDE_dom.
DR   InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR   Pfam; PF03009; GDPD; 1.
DR   SUPFAM; SSF51695; SSF51695; 1.
DR   PROSITE; PS51704; GP_PDE; 1.
PE   1: Evidence at protein level;
DR   PRODOM; Q5LX22.
DR   SWISS-2DPAGE; Q5LX22.
KW   3D-structure {ECO:0000213|PDB:3L12};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   Magnesium {ECO:0000213|PDB:3L12};
KW   Metal-binding {ECO:0000213|PDB:3L12};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023}.
FT   DOMAIN       17    304       GP-PDE. {ECO:0000259|PROSITE:PS51704}.
FT   METAL        49     49       Magnesium. {ECO:0000213|PDB:3L12}.
FT   METAL        51     51       Magnesium. {ECO:0000213|PDB:3L12}.
FT   METAL       148    148       Magnesium. {ECO:0000213|PDB:3L12}.
SQ   SEQUENCE   312 AA;  34228 MW;  8C8FA720DEAB1561 CRC64;
     MNGFSQLEGL RGHPSVVRVI GHRGARGVMP ENTLEGFAFT LAAGVRALEF DVVMTADGVP
     VVTHNHHLAN AMTRDGQGHW LTGAERQVAE MTYAEIRALD VGGLDGRTVY GRRFPDQAFL
     TGIHVPRLGE LLDLCAGYGD QAPYLLLELK SDPALMHDHA ARAEMVAAVL ADVRRYRMEP
     RTVMHSFDWA LLGECRRQAP DLPTSYLSQL PENADDPGED SAKPVGPDYD RMTESLPQAV
     ASAGGQLWCP YFLDVTPELV AEAHDLGLIV LTWTVNEPED IRRMATTGVD GIVTDYPGRT
     QRILIDMGLS WT
//

If you have problems or comments...

PBIL Back to PBIL home page