(data stored in ACNUC7421 zone)

SWISSPROT: Q5LWD6_RUEPO

ID   Q5LWD6_RUEPO            Unreviewed;       292 AA.
AC   Q5LWD6;
DT   01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 85.
DE   SubName: Full=RNA polymerase sigma-32 factor {ECO:0000313|EMBL:AAV93724.1};
GN   Name=rpoH-1 {ECO:0000313|EMBL:AAV93724.1};
GN   OrderedLocusNames=SPO0406 {ECO:0000313|EMBL:AAV93724.1};
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV93724.1, ECO:0000313|Proteomes:UP000001023};
RN   [1] {ECO:0000313|EMBL:AAV93724.1, ECO:0000313|Proteomes:UP000001023}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA   Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E.,
RA   Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., Deboy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2] {ECO:0000313|EMBL:AAV93724.1, ECO:0000313|Proteomes:UP000001023}
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC   {ECO:0000313|Proteomes:UP000001023};
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP000031; AAV93724.1; -; Genomic_DNA.
DR   RefSeq; WP_011046167.1; NC_003911.12.
DR   STRING; 246200.SPO0406; -.
DR   EnsemblBacteria; AAV93724; AAV93724; SPO0406.
DR   KEGG; sil:SPO0406; -.
DR   eggNOG; ENOG4105DEK; Bacteria.
DR   eggNOG; COG0568; LUCA.
DR   HOGENOM; HOG000270269; -.
DR   KO; K03089; -.
DR   OMA; NPKQREV; -.
DR   OrthoDB; 1565734at2; -.
DR   BioCyc; RPOM246200:G1G48-413-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q5LWD6.
DR   SWISS-2DPAGE; Q5LWD6.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001023};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       45    114       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      227    278       Sigma70_r4. {ECO:0000259|Pfam:PF04545}.
FT   COILED      251    271       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   292 AA;  33700 MW;  4AD25AC922791813 CRC64;
     MALNDPQDKR MSRQAMKAEL LDAETELALA YAWRDHRDEA ALHRLITAYM RLAISMAAKF
     KRYGAPMNDL IQEAGLGLMK AADKFDPDRG VRFSTYAVWW IKASIQDYVM RNWSMVRTGS
     TSSQKSLFFN MRRVQARLER EAATDGLALD RHQLHQMIAS EIGVPLRDVE MMEGRLSGSD
     FSLNATQASD EEGREWIEAL EDESEQAAEL VAHRHDTEQL RDWLIEAMQA LNERERFIVR
     ERKLRDEPRT LESLGDELGL SKERVRQLEA AAFAKMRKSL EARSREVQHF LV
//

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