(data stored in ACNUC7421 zone)

SWISSPROT: RL6_RUEPO

ID   RL6_RUEPO               Reviewed;         177 AA.
AC   Q5LW43;
DT   28-NOV-2006, integrated into UniProtKB/Swiss-Prot.
DT   01-FEB-2005, sequence version 1.
DT   08-MAY-2019, entry version 85.
DE   RecName: Full=50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365};
GN   Name=rplF {ECO:0000255|HAMAP-Rule:MF_01365};
GN   OrderedLocusNames=SPO0500;
OS   Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
OS   (Silicibacter pomeroyi).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Ruegeria.
OX   NCBI_TaxID=246200;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3;
RX   PubMed=15602564; DOI=10.1038/nature03170;
RA   Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA   Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C.,
RA   Brinkac L.M., Lewis M., Johri S., Weaver B., Pai G., Eisen J.A.,
RA   Rahe E., Sheldon W.M., Ye W., Miller T.R., Carlton J., Rasko D.A.,
RA   Paulsen I.T., Ren Q., Daugherty S.C., DeBoy R.T., Dodson R.J.,
RA   Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Rosovitz M.J.,
RA   Haft D.H., Selengut J., Ward N.;
RT   "Genome sequence of Silicibacter pomeroyi reveals adaptations to the
RT   marine environment.";
RL   Nature 432:910-913(2004).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 700808 / DSM 15171 / DSS-3;
RX   PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA   Rivers A.R., Smith C.B., Moran M.A.;
RT   "An updated genome annotation for the model marine bacterium Ruegeria
RT   pomeroyi DSS-3.";
RL   Stand. Genomic Sci. 9:11-11(2014).
CC   -!- FUNCTION: This protein binds to the 23S rRNA, and is important in
CC       its secondary structure. It is located near the subunit interface
CC       in the base of the L7/L12 stalk, and near the tRNA binding site of
CC       the peptidyltransferase center. {ECO:0000255|HAMAP-Rule:MF_01365}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC       Rule:MF_01365}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL6 family.
CC       {ECO:0000255|HAMAP-Rule:MF_01365}.
DR   EMBL; CP000031; AAV93817.1; -; Genomic_DNA.
DR   RefSeq; WP_011046259.1; NC_003911.12.
DR   SMR; Q5LW43; -.
DR   STRING; 246200.SPO0500; -.
DR   PRIDE; Q5LW43; -.
DR   EnsemblBacteria; AAV93817; AAV93817; SPO0500.
DR   KEGG; sil:SPO0500; -.
DR   eggNOG; ENOG4108R5J; Bacteria.
DR   eggNOG; COG0097; LUCA.
DR   HOGENOM; HOG000039903; -.
DR   KO; K02933; -.
DR   OMA; INNMVVG; -.
DR   OrthoDB; 1398618at2; -.
DR   BioCyc; RPOM246200:G1G48-507-MONOMER; -.
DR   Proteomes; UP000001023; Chromosome.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.90.930.12; -; 2.
DR   HAMAP; MF_01365_B; Ribosomal_L6_B; 1.
DR   InterPro; IPR000702; Ribosomal_L6.
DR   InterPro; IPR020040; Ribosomal_L6_a/b-dom.
DR   InterPro; IPR036789; Ribosomal_L6_a/b-dom_sf.
DR   InterPro; IPR019906; Ribosomal_L6_bac-type.
DR   InterPro; IPR002358; Ribosomal_L6_CS.
DR   PANTHER; PTHR11655; PTHR11655; 1.
DR   PANTHER; PTHR11655:SF14; PTHR11655:SF14; 1.
DR   Pfam; PF00347; Ribosomal_L6; 2.
DR   PIRSF; PIRSF002162; Ribosomal_L6; 1.
DR   PRINTS; PR00059; RIBOSOMALL6.
DR   SUPFAM; SSF56053; SSF56053; 2.
DR   TIGRFAMs; TIGR03654; L6_bact; 1.
DR   PROSITE; PS00525; RIBOSOMAL_L6_1; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q5LW43.
DR   SWISS-2DPAGE; Q5LW43.
KW   Complete proteome; Reference proteome; Ribonucleoprotein;
KW   Ribosomal protein; RNA-binding; rRNA-binding.
FT   CHAIN         1    177       50S ribosomal protein L6.
FT                                /FTId=PRO_0000260934.
SQ   SEQUENCE   177 AA;  19154 MW;  AEBECEE771B0B3C1 CRC64;
     MSRIGKKPVE LPSGVSAAVS GQTIEVKGPK GARSFTATDD VTITVDGNVV SITPRGMSKR
     ARQQWGMSRT MVANLVAGVT EGFKKELEIT GVGYRANAQG NTLKLNLGYS HDVDFTVPAG
     VTVSTPKQTE IVVEGIDQQQ VGEVAAKIRE WRSPEPYKGK GIRYKGEFIF RKDGKKK
//

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