(data stored in SCRATCH zone)

SWISSPROT: Q13SC3_PARXL

ID   Q13SC3_PARXL            Unreviewed;       491 AA.
AC   Q13SC3;
DT   22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT   22-AUG-2006, sequence version 1.
DT   08-MAY-2019, entry version 102.
DE   SubName: Full=Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABE33016.1};
GN   ORFNames=Bxe_B2979 {ECO:0000313|EMBL:ABE33016.1};
OS   Paraburkholderia xenovorans (strain LB400).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=266265 {ECO:0000313|EMBL:ABE33016.1, ECO:0000313|Proteomes:UP000001817};
RN   [1] {ECO:0000313|EMBL:ABE33016.1, ECO:0000313|Proteomes:UP000001817}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LB400 {ECO:0000313|EMBL:ABE33016.1,
RC   ECO:0000313|Proteomes:UP000001817};
RX   PubMed=17030797; DOI=10.1073/pnas.0606924103;
RA   Chain P.S., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L.,
RA   Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M.,
RA   Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A.,
RA   Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M.,
RA   Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B.,
RA   Tiedje J.M.;
RT   "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp
RT   genome shaped for versatility.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
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DR   EMBL; CP000271; ABE33016.1; -; Genomic_DNA.
DR   RefSeq; WP_011490405.1; NZ_CP008762.1.
DR   STRING; 266265.Bxe_B2979; -.
DR   EnsemblBacteria; ABE33016; ABE33016; Bxe_B2979.
DR   GeneID; 4006870; -.
DR   KEGG; bxb:DR64_5309; -.
DR   KEGG; bxe:Bxe_B2979; -.
DR   PATRIC; fig|266265.5.peg.4710; -.
DR   eggNOG; ENOG4108JUB; Bacteria.
DR   eggNOG; COG3829; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   OMA; WINKRYA; -.
DR   OrthoDB; 123059at2; -.
DR   BioCyc; BXEN266265:BXE_RS22325-MONOMER; -.
DR   Proteomes; UP000001817; Chromosome 2.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd00130; PAS; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013656; PAS_4.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF08448; PAS_4; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF55785; SSF55785; 1.
DR   PROSITE; PS50112; PAS; 1.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; Q13SC3.
DR   SWISS-2DPAGE; Q13SC3.
KW   ATP-binding {ECO:0000256|SAAS:SAAS00473007};
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001817};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00814512};
KW   Nucleotide-binding {ECO:0000256|SAAS:SAAS00473126};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001817};
KW   Transcription {ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN       19     60       PAS. {ECO:0000259|PROSITE:PS50112}.
FT   DOMAIN      161    392       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   COILED      134    154       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   491 AA;  53071 MW;  D7AC4A2CC41FBC32 CRC64;
     MMNDWAGLPA TYGDVLRRAM DSLFRTFENF SEGTFIVDAD ARVVWINKRY AARFGFSDPE
     QAIGRDCEAV IPNSLMREVV KTGKPILLDI LETDREPLVV TRLPLKDDSG TTVGAVGFAL
     FDELKALTPL FSHYSRVQEE LIATRQSLAQ ARRAKYTFGS FVGTSAASLE VKRQARRAAQ
     LESPVLLLGE TGTGKELLAH AIHGGSARAN QPLVTVNVAA IPDTLLEVEF FGAAPGAYTG
     ADRKGRVGKF ELANGGTLFL DEIGDMPLPL QGKLLRVLQD KEFEPLGSNR IVRADVRIIA
     ATSADLPALV AAGRFRADLF YRLNVLTIHA PPLRERASDI EALAYAMLED LSTQASGASH
     FELQDDALRL LCSYGWPGNV RELRNTLERA VMLSDSERID ARALAPFIGS APGGGQRRQA
     AADVPSPARA PDAPTGAPEP ASWSDAMAAF EKRFLTDALR ANGGRVIETA SQIGMGRATL
     YKKIAAYGIG V
//

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