(data stored in ACNUC7421 zone)

SWISSPROT: YBEY_RHOPS

ID   YBEY_RHOPS              Reviewed;         195 AA.
AC   Q13EK9;
DT   17-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   31-OCT-2006, sequence version 1.
DT   08-MAY-2019, entry version 68.
DE   RecName: Full=Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};
GN   Name=ybeY {ECO:0000255|HAMAP-Rule:MF_00009};
GN   OrderedLocusNames=RPD_0240;
OS   Rhodopseudomonas palustris (strain BisB5).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Bradyrhizobiaceae; Rhodopseudomonas.
OX   NCBI_TaxID=316057;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BisB5;
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Pelletier D.A., Kyrpides N.,
RA   Lykidis A., Oda Y., Harwood C.S., Richardson P.;
RT   "Complete sequence of Rhodopseudomonas palustris BisB5.";
RL   Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Single strand-specific metallo-endoribonuclease involved
CC       in late-stage 70S ribosome quality control and in maturation of
CC       the 3' terminus of the 16S rRNA. {ECO:0000255|HAMAP-
CC       Rule:MF_00009}.
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00009};
CC       Note=Binds 1 zinc ion. {ECO:0000255|HAMAP-Rule:MF_00009};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00009}.
CC   -!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
CC       {ECO:0000255|HAMAP-Rule:MF_00009}.
DR   EMBL; CP000283; ABE37480.1; -; Genomic_DNA.
DR   SMR; Q13EK9; -.
DR   STRING; 316057.RPD_0240; -.
DR   EnsemblBacteria; ABE37480; ABE37480; RPD_0240.
DR   KEGG; rpd:RPD_0240; -.
DR   eggNOG; ENOG4105KGE; Bacteria.
DR   eggNOG; COG0319; LUCA.
DR   HOGENOM; HOG000132869; -.
DR   KO; K07042; -.
DR   OMA; NTKPATM; -.
DR   Proteomes; UP000001818; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.390.30; -; 1.
DR   HAMAP; MF_00009; Endoribonucl_YbeY; 1.
DR   InterPro; IPR023091; MetalPrtase_cat_dom_sf_prd.
DR   InterPro; IPR002036; YbeY.
DR   InterPro; IPR020549; YbeY_CS.
DR   Pfam; PF02130; UPF0054; 1.
DR   TIGRFAMs; TIGR00043; TIGR00043; 1.
DR   PROSITE; PS01306; UPF0054; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q13EK9.
DR   SWISS-2DPAGE; Q13EK9.
KW   Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Metal-binding;
KW   Nuclease; Ribosome biogenesis; rRNA processing; Zinc.
FT   CHAIN         1    195       Endoribonuclease YbeY.
FT                                /FTId=PRO_0000284294.
FT   METAL       152    152       Zinc; catalytic. {ECO:0000255|HAMAP-
FT                                Rule:MF_00009}.
FT   METAL       156    156       Zinc; catalytic. {ECO:0000255|HAMAP-
FT                                Rule:MF_00009}.
FT   METAL       162    162       Zinc; catalytic. {ECO:0000255|HAMAP-
FT                                Rule:MF_00009}.
SQ   SEQUENCE   195 AA;  20535 MW;  5917502C6785E4CA CRC64;
     MPQSNAGGRS DCIGAARDSS FGPMSSSAIP ATEVVIAADC WQAEASAESV VLRAIEAAAT
     MIDADTGDAE LAVMLTDDDG VRALNASYRG IDKPTNVLSF PAPQPDYQDA CQDSGGAPQM
     LGDIAIAYQT VRREADDEGK PFAHHLSHLA VHGFLHLVGY DHETDAEAET MESTERSILA
     GLGIPDPYAD QDRVS
//

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