(data stored in ACNUC1104 zone)

SWISSPROT: A1SDJ1_NOCSJ

ID   A1SDJ1_NOCSJ            Unreviewed;       278 AA.
AC   A1SDJ1;
DT   06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT   06-FEB-2007, sequence version 1.
DT   08-MAY-2019, entry version 82.
DE   SubName: Full=RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG {ECO:0000313|EMBL:ABL79876.1};
GN   OrderedLocusNames=Noca_0332 {ECO:0000313|EMBL:ABL79876.1};
OS   Nocardioides sp. (strain ATCC BAA-499 / JS614).
OC   Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae;
OC   Nocardioides.
OX   NCBI_TaxID=196162 {ECO:0000313|EMBL:ABL79876.1, ECO:0000313|Proteomes:UP000000640};
RN   [1] {ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R.,
RA   Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA   Mattes T., Gossett J., Richardson P.;
RT   "Complete sequence of chromosome 1 of Nocardioides sp. JS614.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABL79876.1, ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RX   PubMed=21551312; DOI=10.1128/JB.05109-11;
RA   Coleman N.V., Wilson N.L., Barry K., Brettin T.S., Bruce D.C.,
RA   Copeland A., Dalin E., Detter J.C., Del Rio T.G., Goodwin L.A.,
RA   Hammon N.M., Han S., Hauser L.J., Israni S., Kim E., Kyrpides N.,
RA   Land M.L., Lapidus A., Larimer F.W., Lucas S., Pitluck S.,
RA   Richardson P., Schmutz J., Tapia R., Thompson S., Tice H.N.,
RA   Spain J.C., Gossett J.G., Mattes T.E.;
RT   "Genome Sequence of the ethene- and vinyl chloride-oxidizing
RT   actinomycete Nocardioides sp. strain JS614.";
RL   J. Bacteriol. 193:3399-3400(2011).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP000509; ABL79876.1; -; Genomic_DNA.
DR   RefSeq; WP_011753827.1; NC_008699.1.
DR   STRING; 196162.Noca_0332; -.
DR   EnsemblBacteria; ABL79876; ABL79876; Noca_0332.
DR   KEGG; nca:Noca_0332; -.
DR   eggNOG; ENOG4105DN4; Bacteria.
DR   eggNOG; COG1191; LUCA.
DR   HOGENOM; HOG000270271; -.
DR   KO; K02405; -.
DR   OMA; LIRTHMP; -.
DR   OrthoDB; 1857862at2; -.
DR   BioCyc; NSP196162:GH4V-337-MONOMER; -.
DR   Proteomes; UP000000640; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   SUPFAM; SSF88659; SSF88659; 2.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; A1SDJ1.
DR   SWISS-2DPAGE; A1SDJ1.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000000640};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000640};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       11     81       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      174    222       Sigma70_r4. {ECO:0000259|Pfam:PF04545}.
FT   COILED      196    216       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   278 AA;  30036 MW;  634BC1DE2661E4C9 CRC64;
     MTIAERDQLA VQHVPLVAHL VRETMARVPS YMDRNDLHSA GLLALVQAAR AFDPERGVPF
     AGYASTRIRG ALVDELRSVD WASRSVRRRA REIEAARARL AATLGQFPDD AAVAEALGIT
     PEEIGKADSE VARAVVLPLD AGPNAGFVES LAGRDPGPEE EALHAERAQY LAAAIEELPE
     RLRHVVRGYF VAQRPMAELA AELGVSESRI SQLRAEALVL LRDALAEAFE PHLAAPHPNP
     DGVAARRRLA YTSAVAARYA ARRTMPAARV REGLSSIA
//

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