(data stored in SCRATCH zone)

SWISSPROT: A1SE85_NOCSJ

ID   A1SE85_NOCSJ            Unreviewed;       517 AA.
AC   A1SE85;
DT   06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT   06-FEB-2007, sequence version 1.
DT   11-DEC-2019, entry version 55.
DE   SubName: Full=Integrase, catalytic region {ECO:0000313|EMBL:ABL80120.1};
GN   OrderedLocusNames=Noca_0581 {ECO:0000313|EMBL:ABL80120.1}, Noca_2756
GN   {ECO:0000313|EMBL:ABL82259.1};
OS   Nocardioides sp. (strain ATCC BAA-499 / JS614).
OC   Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae;
OC   Nocardioides.
OX   NCBI_TaxID=196162 {ECO:0000313|EMBL:ABL80120.1, ECO:0000313|Proteomes:UP000000640};
RN   [1] {ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA   Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J.,
RA   Richardson P.;
RT   "Complete sequence of chromosome 1 of Nocardioides sp. JS614.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABL80120.1, ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640}, and
RC   JS614 {ECO:0000313|EMBL:ABL80120.1};
RX   PubMed=21551312; DOI=10.1128/JB.05109-11;
RA   Coleman N.V., Wilson N.L., Barry K., Brettin T.S., Bruce D.C., Copeland A.,
RA   Dalin E., Detter J.C., Del Rio T.G., Goodwin L.A., Hammon N.M., Han S.,
RA   Hauser L.J., Israni S., Kim E., Kyrpides N., Land M.L., Lapidus A.,
RA   Larimer F.W., Lucas S., Pitluck S., Richardson P., Schmutz J., Tapia R.,
RA   Thompson S., Tice H.N., Spain J.C., Gossett J.G., Mattes T.E.;
RT   "Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete
RT   Nocardioides sp. strain JS614.";
RL   J. Bacteriol. 193:3399-3400(2011).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CP000509; ABL80120.1; -; Genomic_DNA.
DR   EMBL; CP000509; ABL82259.1; -; Genomic_DNA.
DR   STRING; 196162.Noca_2756; -.
DR   EnsemblBacteria; ABL80120; ABL80120; Noca_0581.
DR   EnsemblBacteria; ABL82259; ABL82259; Noca_2756.
DR   KEGG; nca:Noca_0581; -.
DR   KEGG; nca:Noca_2756; -.
DR   eggNOG; ENOG4106F8T; Bacteria.
DR   eggNOG; COG4584; LUCA.
DR   HOGENOM; HOG000223688; -.
DR   OMA; TTLFCAW; -.
DR   BioCyc; NSP196162:GH4V-583-MONOMER; -.
DR   Proteomes; UP000000640; Chromosome.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   Gene3D; 3.30.420.10; -; 1.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   Pfam; PF00665; rve; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   4: Predicted;
DR   PRODOM; A1SE85.
DR   SWISS-2DPAGE; A1SE85.
KW   Reference proteome {ECO:0000313|Proteomes:UP000000640}.
FT   DOMAIN          113..292
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          370..396
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          473..517
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        482..517
FT                   /note="Polar"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   517 AA;  56820 MW;  FE9711C69D6237EB CRC64;
     MKSAEEIMKI LDAYDLTGSL RDAGELAGCS HHTVKRYVVR RAGAGELDKA AVRPQLIDEY
     LPKVEEWVER SKGKVRADKA HEKLVALGYT GSERTTRRAV AKVKAAYRAG HVRVHRPWVT
     EPGMWLQYDY GDGPVVDGVK TVLFVAWLAW SRFRVVIALR DKTMPSVFAA LDQTFRRLGG
     VPTYVLTDNE KTVTVEHIAG IPVRNSQLVG FAEHYSVVVH TCVPADPASK GGTESSVKIS
     KADLVPKDTN LREEYGSFAE LEAACEEFCH KVNTRDHRIT KRPPIEMLAE ERTRLHPVAM
     TPHTVAFGTT RVVPANTPMV MFESGQYSVP HALLGATVWV RVHGRGGDEQ VVIVHVGQDG
     PVEVARHHRA TPGTPRINDD HFPPQPAGPL DRRPRAKNPA ESEFLDLGEG ARLWLIEAAA
     AGTGRMRVKM SEALALAKLF DPVEVDWALG HAAVHGRFAE ADLASILDHH ARRPAGGEHR
     ASEDSSLTQG TSAWSRLGQQ VGQQVGQQVE ADSEVTR
//

If you have problems or comments...

PBIL Back to PBIL home page