(data stored in ACNUC7421 zone)

SWISSPROT: A8FPY9_SHESH

ID   A8FPY9_SHESH            Unreviewed;       547 AA.
AC   A8FPY9;
DT   13-NOV-2007, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2007, sequence version 1.
DT   08-MAY-2019, entry version 82.
DE   SubName: Full=Sigma-54 dependent transcriptional regulator, fis family {ECO:0000313|EMBL:ABV34912.1};
GN   OrderedLocusNames=Ssed_0299 {ECO:0000313|EMBL:ABV34912.1};
OS   Shewanella sediminis (strain HAW-EB3).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=425104 {ECO:0000313|EMBL:ABV34912.1, ECO:0000313|Proteomes:UP000002015};
RN   [1] {ECO:0000313|EMBL:ABV34912.1, ECO:0000313|Proteomes:UP000002015}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HAW-EB3 {ECO:0000313|EMBL:ABV34912.1,
RC   ECO:0000313|Proteomes:UP000002015};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA   Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D.,
RA   Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Kyrpides N., Kim E., Zhao J.-S., Richardson P.;
RT   "Complete sequence of Shewanella sediminis HAW-EB3.";
RL   Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP000821; ABV34912.1; -; Genomic_DNA.
DR   RefSeq; WP_012004438.1; NC_009831.1.
DR   STRING; 425104.Ssed_0299; -.
DR   EnsemblBacteria; ABV34912; ABV34912; Ssed_0299.
DR   KEGG; sse:Ssed_0299; -.
DR   eggNOG; ENOG4108JU7; Bacteria.
DR   eggNOG; COG1221; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   OMA; VYPIRIP; -.
DR   OrthoDB; 123059at2; -.
DR   BioCyc; SSED425104:G1G9Y-315-MONOMER; -.
DR   Proteomes; UP000002015; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR024096; NO_sig/Golgi_transp_ligand-bd.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   InterPro; IPR004096; V4R.
DR   InterPro; IPR010523; XylR_N.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   Pfam; PF02830; V4R; 1.
DR   Pfam; PF06505; XylR_N; 1.
DR   ProDom; PD485437; XylR_N; 1.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00989; V4R; 1.
DR   SUPFAM; SSF111126; SSF111126; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; A8FPY9.
DR   SWISS-2DPAGE; A8FPY9.
KW   ATP-binding {ECO:0000256|SAAS:SAAS00473007};
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000002015};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00814512};
KW   Nucleotide-binding {ECO:0000256|SAAS:SAAS00473126};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002015};
KW   Transcription {ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN      235    464       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   COILED      194    228       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   547 AA;  61945 MW;  1C360F26FACEA2F9 CRC64;
     MLINDIDPKD FLEFVPEEGI IKLKDQRMLL FDAVALGLLR KELIDTFGHF AARSILTRFG
     YAHGWRTAEL LRSEYPTIFS QDEGGSYLHM LFGLTRTCDF NHSDNLASGF SMQVCWDNSY
     EAEQHHLLFG VAEEPICWTL TGFASGYESC KQEREVYFIE DKCRGAGDPF CRIVGKFRED
     WGDELEAHQP FYSMESADTL LKGLTQKLKR TELDLKRQQE QLSLYNANLH NISGLVTRSN
     EMKRIVELAR RIAKVDSSVV VSGESGVGKE RVSRFIHDHS SRASGPFVAV NCGALTETLL
     ESELFGHKKG AFTGADRDHI GLFEQANEGT LFLDEIGDIS AAMQVKLLRA LQEKEIRRVG
     DSQDRKVNVR IIAATHRNLS EEVKANRFRA DLYYRLCVIE LTIPPLRDRA EDILFIAKVI
     LEQVNKDMNR NVIGFSPKAS ELLLSYGWPG NVRELQNVVE RSVALCMGQE ITPGDFPETM
     TQNPVLKSQL STPTLSLEEM EMEYILSVLK SCGGNKTLAM EKLKIGKTTL YRKLNDYRKL
     SEELVTA
//

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