(data stored in ACNUC7421 zone)

SWISSPROT: A8FQD1_SHESH

ID   A8FQD1_SHESH            Unreviewed;       870 AA.
AC   A8FQD1;
DT   13-NOV-2007, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2007, sequence version 1.
DT   07-JUN-2017, entry version 56.
DE   SubName: Full=Sensory box protein {ECO:0000313|EMBL:ABV35054.1};
GN   OrderedLocusNames=Ssed_0441 {ECO:0000313|EMBL:ABV35054.1};
OS   Shewanella sediminis (strain HAW-EB3).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=425104 {ECO:0000313|EMBL:ABV35054.1, ECO:0000313|Proteomes:UP000002015};
RN   [1] {ECO:0000313|EMBL:ABV35054.1, ECO:0000313|Proteomes:UP000002015}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HAW-EB3 {ECO:0000313|EMBL:ABV35054.1,
RC   ECO:0000313|Proteomes:UP000002015};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T.,
RA   Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D.,
RA   Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Kyrpides N., Kim E., Zhao J.-S., Richardson P.;
RT   "Complete sequence of Shewanella sediminis HAW-EB3.";
RL   Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000821; ABV35054.1; -; Genomic_DNA.
DR   RefSeq; WP_012140791.1; NC_009831.1.
DR   ProteinModelPortal; A8FQD1; -.
DR   STRING; 425104.Ssed_0441; -.
DR   EnsemblBacteria; ABV35054; ABV35054; Ssed_0441.
DR   KEGG; sse:Ssed_0441; -.
DR   eggNOG; ENOG4105BZU; Bacteria.
DR   eggNOG; ENOG410XNMH; LUCA.
DR   HOGENOM; HOG000286393; -.
DR   OMA; DMACYMA; -.
DR   OrthoDB; POG091H049G; -.
DR   BioCyc; SSED425104:GH7Q-463-MONOMER; -.
DR   Proteomes; UP000002015; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   CDD; cd01948; EAL; 1.
DR   CDD; cd01949; GGDEF; 1.
DR   CDD; cd00130; PAS; 1.
DR   Gene3D; 3.20.20.450; -; 1.
DR   InterPro; IPR001633; EAL_dom.
DR   InterPro; IPR000160; GGDEF_dom.
DR   InterPro; IPR029787; Nucleotide_cyclase.
DR   InterPro; IPR000014; PAS.
DR   Pfam; PF00563; EAL; 1.
DR   Pfam; PF00990; GGDEF; 1.
DR   Pfam; PF13188; PAS_8; 1.
DR   SMART; SM00052; EAL; 1.
DR   SMART; SM00267; GGDEF; 1.
DR   SMART; SM00091; PAS; 1.
DR   SUPFAM; SSF141868; SSF141868; 1.
DR   SUPFAM; SSF55073; SSF55073; 1.
DR   SUPFAM; SSF55785; SSF55785; 1.
DR   TIGRFAMs; TIGR00254; GGDEF; 1.
DR   TIGRFAMs; TIGR00229; sensory_box; 1.
DR   PROSITE; PS50883; EAL; 1.
DR   PROSITE; PS50887; GGDEF; 1.
DR   PROSITE; PS50112; PAS; 1.
PE   4: Predicted;
DR   PRODOM; A8FQD1.
DR   SWISS-2DPAGE; A8FQD1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002015};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM      7     30       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    234    254       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN      307    351       PAS (PER-ARNT-SIM). {ECO:0000259|PROSITE:
FT                                PS50112}.
FT   DOMAIN      458    591       GGDEF. {ECO:0000259|PROSITE:PS50887}.
FT   DOMAIN      602    856       EAL. {ECO:0000259|PROSITE:PS50883}.
SQ   SEQUENCE   870 AA;  97989 MW;  CE05B1BD788F22D1 CRC64;
     MRIGKKLIVF IVGFCLPAVI SVSYCLSMWF DHRVDTFKNS AVNIELSTIK TQIEKDINQL
     QLLANVYALP LSKLAIEERK LLDEAWRDSQ LAEHLSLFYL NNGELQPFSP IYDDIMSFEF
     DTVPVQLKHA TQPLSGIYML QDKSFIVSLV PVSQSRSIIL ARQLTPEYLS SYGLKGLVSH
     INLVPGESSL VYDVNSDKPI SSIKVPSLVF ESPVHLEIQF AENAFNQVKL KYDLVTFSIV
     GVGLLILIIG YIWLKLGLIR PFRRLMTQVA DIDPIAKTYT PLVGSGCSEL VIMAERVNTL
     LARIFQQKER FKTTLESIAE AVILTDIGAK VVYLNPQAER LLGVKGESAI GVSVDSLVKT
     DKSIKDDLFE FMFSQAQQPV LSKLKLKTDK TRILERSISN LLNQQRIVIG TVIVLRDITR
     EELLKRQLRQ KANFDSITSL LNRRAFEERL EKFSHDAQSI AICYFDLEQF KLINDSCGHS
     AGDTMLAMVA KAMQSCLSKD EMLARLGGDE FGLAIRDHNA SEVAQLVKRI VSSVSMQVLR
     DNGCHYKVGV SAGVAIARAP YISPKELIKD ADVACIAAKR KGSNQVHFYD DNDKESIYQR
     NAPMWAVRIG QAIEHNELLL YYQPIKGMGP GEHKQRMEIL LRIQEPCGRI LSPAQFIEAA
     ERFKLMNDVD KEVIRKAFLW LSLHEEIWDD HCISINLSGN SLGAEGMVEY IAEQFKRFEI
     PSKCICFEIT ETSAIQNRNR AMDMLNYLRK LGFSFALDDF GTGFASYGYL KELPVDYVKI
     DGCFVKSLAT NAKDFAIVKS IHDVCDVMGI ETVAEFVENQ DIIDRLEDIG INYAQGYAIG
     RPKPLETYIE LRRSRGQPLQ AKPALELISA
//

If you have problems or comments...

PBIL Back to PBIL home page