(data stored in ACNUC29543 zone)

SWISSPROT: B2JL52_PARP8

ID   B2JL52_PARP8            Unreviewed;       648 AA.
AC   B2JL52;
DT   10-JUN-2008, integrated into UniProtKB/TrEMBL.
DT   10-JUN-2008, sequence version 1.
DT   08-MAY-2019, entry version 79.
DE   SubName: Full=GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ACC72581.1};
GN   OrderedLocusNames=Bphy_3427 {ECO:0000313|EMBL:ACC72581.1};
OS   Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 /
OS   STM815) (Burkholderia phymatum).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=391038 {ECO:0000313|EMBL:ACC72581.1, ECO:0000313|Proteomes:UP000001192};
RN   [1] {ECO:0000313|Proteomes:UP000001192}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 17167 / CIP 108236 / LMG 21445 / STM815
RC   {ECO:0000313|Proteomes:UP000001192};
RX   PubMed=25197461; DOI=10.4056/sigs.4861021;
RA   Moulin L., Klonowska A., Caroline B., Booth K., Vriezen J.A.,
RA   Melkonian R., James E.K., Young J.P., Bena G., Hauser L., Land M.,
RA   Kyrpides N., Bruce D., Chain P., Copeland A., Pitluck S., Woyke T.,
RA   Lizotte-Waniewski M., Bristow J., Riley M.;
RT   "Complete genome sequence of Burkholderia phymatum STM815(T), a broad
RT   host range and efficient nitrogen-fixing symbiont of Mimosa species.";
RL   Stand. Genomic Sci. 9:763-774(2014).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP001044; ACC72581.1; -; Genomic_DNA.
DR   RefSeq; WP_012402754.1; NC_010623.1.
DR   STRING; 391038.Bphy_3427; -.
DR   EnsemblBacteria; ACC72581; ACC72581; Bphy_3427.
DR   GeneID; 27743107; -.
DR   KEGG; bph:Bphy_3427; -.
DR   eggNOG; ENOG4107SZ4; Bacteria.
DR   eggNOG; COG3284; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   KO; K21405; -.
DR   OMA; HTLGMVK; -.
DR   OrthoDB; 123059at2; -.
DR   BioCyc; BPHY391038:G1GBS-3527-MONOMER; -.
DR   Proteomes; UP000001192; Chromosome 2.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF01590; GAF; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; B2JL52.
DR   SWISS-2DPAGE; B2JL52.
KW   ATP-binding {ECO:0000256|SAAS:SAAS00473007};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001192};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00814512};
KW   Nucleotide-binding {ECO:0000256|SAAS:SAAS00473126};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001192};
KW   Transcription {ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN      327    559       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
SQ   SEQUENCE   648 AA;  70114 MW;  3E50E1F0C6A0E3C4 CRC64;
     MTQRSVTPSV MGRADALAQA HARSREFGLR ASEAPDFHPL QPFALRDLVE LNRSLYAHAL
     PVMETLHAQI VDTESMVLLT DSNGVILHSL GDSDFVEKAS RVALCAGVSW SEAHRGTNAI
     GTALAEGEPT VVHGGEHFLE ANRILTCSCA PIADPYGRTI GALDVSGDPR GFHKHTLALV
     RMSAQIIENQ LFANQFGNAV RVRFHARSEF IGTLFEGLAA FGANGTLLAA NRSALFQFGR
     PLDALLAQPF EALFGTAFPA ALQQASRAPG ECLTLMLPSG VRVLARAEYA ARPAFSADAR
     PQHTAAPVPP APASCKPRAA AITFATLDTG DARMAAVLGR VEKVRGRDIP LLVLGKTGTG
     KEWLARAMHE ESPRRDAPFV AVNCASLPDT LIEAELFGYE DGAFTGARKR GNVGKIVQAD
     GGTLFLDEIG DMPLAQQVRL MRVLQERSVV PLGGTRAVPV DVRVVCATHR NLRAMIEAGT
     FREDLYYRIN GLVVTLPALA ERTDLPVLVE RILGRLRLVE PDSDRMPARV SLEVLDCFAR
     CRWPGNLRQL ANVLRTAGIM AEGAAEIGLD HLPDDFLHDC EPPRDTPLHA LPATDPPLAA
     RPANMEELQA TLIEQTLARN NGNISAAARE LGLARNTVYR YMRMRTTH
//

If you have problems or comments...

PBIL Back to PBIL home page