(data stored in ACNUC7421 zone)

SWISSPROT: B2UH35_RALPJ

ID   B2UH35_RALPJ            Unreviewed;       500 AA.
AC   B2UH35;
DT   01-JUL-2008, integrated into UniProtKB/TrEMBL.
DT   01-JUL-2008, sequence version 1.
DT   08-MAY-2019, entry version 74.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN   OrderedLocusNames=Rpic_3770 {ECO:0000313|EMBL:ACD28886.1};
OS   Ralstonia pickettii (strain 12J).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Ralstonia.
OX   NCBI_TaxID=402626 {ECO:0000313|EMBL:ACD28886.1, ECO:0000313|Proteomes:UP000002566};
RN   [1] {ECO:0000313|Proteomes:UP000002566}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=12J {ECO:0000313|Proteomes:UP000002566};
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E.,
RA   Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T.,
RA   Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M.,
RA   Hauser L., Kyrpides N., Mikhailova N., Marsh T., Richardson P.;
RT   "Complete sequence of chromosome 2 of Ralstonia pickettii 12J.";
RL   Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|PIRNR:PIRNR000774}.
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DR   EMBL; CP001069; ACD28886.1; -; Genomic_DNA.
DR   RefSeq; WP_012429932.1; NC_010678.1.
DR   STRING; 402626.Rpic_3770; -.
DR   EnsemblBacteria; ACD28886; ACD28886; Rpic_3770.
DR   GeneID; 6285437; -.
DR   KEGG; rpi:Rpic_3770; -.
DR   PATRIC; fig|402626.5.peg.11; -.
DR   eggNOG; ENOG4105DTW; Bacteria.
DR   eggNOG; COG1508; LUCA.
DR   HOGENOM; HOG000071905; -.
DR   KO; K03092; -.
DR   OMA; NPPAIEF; -.
DR   OrthoDB; 1906842at2; -.
DR   BioCyc; RPIC402626:GH94-3780-MONOMER; -.
DR   Proteomes; UP000002566; Chromosome 2.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.1330; -; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   PANTHER; PTHR32248; PTHR32248; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; B2UH35.
DR   SWISS-2DPAGE; B2UH35.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002566};
KW   DNA-binding {ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000774};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002566};
KW   Sigma factor {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN      132    328       Sigma54_CBD. {ECO:0000259|Pfam:PF04963}.
FT   DOMAIN      343    499       Sigma54_DBD. {ECO:0000259|Pfam:PF04552}.
SQ   SEQUENCE   500 AA;  55345 MW;  B7E4D8BB0DA9D8AA CRC64;
     MVKAALEMRA KQHLALTPRL QQSVKLLQLS ATEFAQEMQE ALASNPFLEE VEQEAGAQPD
     ATRANDLPGP ADLDGSGTDH TPSEALPLET TTSAIETDPA LATADEFPAD FGTYYSHGGA
     HHGDGEDSDI GEWVHATPSL REHLHQELRS YRLSQRDCLL GQTVIEALDD DGYLRQLLSE
     LIPLAPVEPP PTEKEMQIAL ALVQSLDPPG VAARDLSECL RLQIEARPAD TEAEERIQEV
     AHDIVRSHLP RLAKREFTQM RRALGCTEDE LRDACALIRM LDPRPGLRFS QAHAGYIVPD
     VIVAKIRGKW IAVTNPAVAP CARINKVYAE LFAQTRGYHR TPLAHQLQEA RWLIRNAQQR
     FATIQRVAEA IVAHQKHFLE YGEVAMKPLV LRDVAEELGL HESTISRATG NKYMATPRGI
     FEFKYFFSRQ LATDTGGACS AASVRALLKE MIEAEDADAP LSDVSLAKML AEQGVIVARR
     TVAKYRGLMR IAPAEMRRQV
//

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