(data stored in ACNUC7421 zone)

SWISSPROT: YBEY_SINFN

ID   YBEY_SINFN              Reviewed;         173 AA.
AC   C3MF10;
DT   28-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT   16-JUN-2009, sequence version 1.
DT   07-JUN-2017, entry version 47.
DE   RecName: Full=Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};
GN   Name=ybeY {ECO:0000255|HAMAP-Rule:MF_00009};
GN   OrderedLocusNames=NGR_c00430;
OS   Sinorhizobium fredii (strain NBRC 101917 / NGR234).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX   NCBI_TaxID=394;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101917 / NGR234;
RX   PubMed=19376903; DOI=10.1128/AEM.00515-09;
RA   Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A.,
RA   Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A.,
RA   Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A.,
RA   Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.;
RT   "Rhizobium sp. strain NGR234 possesses a remarkable number of
RT   secretion systems.";
RL   Appl. Environ. Microbiol. 75:4035-4045(2009).
CC   -!- FUNCTION: Single strand-specific metallo-endoribonuclease involved
CC       in late-stage 70S ribosome quality control and in maturation of
CC       the 3' terminus of the 16S rRNA. {ECO:0000255|HAMAP-
CC       Rule:MF_00009}.
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00009};
CC       Note=Binds 1 zinc ion. {ECO:0000255|HAMAP-Rule:MF_00009};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00009}.
CC   -!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
CC       {ECO:0000255|HAMAP-Rule:MF_00009}.
DR   EMBL; CP001389; ACP23847.1; -; Genomic_DNA.
DR   RefSeq; WP_012706632.1; NC_012587.1.
DR   RefSeq; YP_002824600.1; NC_012587.1.
DR   ProteinModelPortal; C3MF10; -.
DR   SMR; C3MF10; -.
DR   STRING; 394.NGR_c00430; -.
DR   EnsemblBacteria; ACP23847; ACP23847; NGR_c00430.
DR   GeneID; 7790622; -.
DR   KEGG; rhi:NGR_c00430; -.
DR   PATRIC; fig|394.7.peg.2835; -.
DR   eggNOG; ENOG4105KGE; Bacteria.
DR   eggNOG; COG0319; LUCA.
DR   HOGENOM; HOG000132869; -.
DR   KO; K07042; -.
DR   OMA; LGYDHMN; -.
DR   OrthoDB; POG091H029S; -.
DR   Proteomes; UP000001054; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR   Gene3D; 3.40.390.30; -; 1.
DR   HAMAP; MF_00009; Endoribonucl_YbeY; 1.
DR   InterPro; IPR023091; MetalPrtase_cat_dom_prd.
DR   InterPro; IPR002036; YbeY.
DR   InterPro; IPR020549; YbeY_CS.
DR   Pfam; PF02130; UPF0054; 1.
DR   TIGRFAMs; TIGR00043; TIGR00043; 1.
DR   PROSITE; PS01306; UPF0054; 1.
PE   3: Inferred from homology;
DR   PRODOM; C3MF10.
DR   SWISS-2DPAGE; C3MF10.
KW   Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Metal-binding;
KW   Nuclease; Reference proteome; Ribosome biogenesis; rRNA processing;
KW   Zinc.
FT   CHAIN         1    173       Endoribonuclease YbeY.
FT                                /FTId=PRO_1000199990.
FT   METAL       126    126       Zinc; catalytic. {ECO:0000255|HAMAP-
FT                                Rule:MF_00009}.
FT   METAL       130    130       Zinc; catalytic. {ECO:0000255|HAMAP-
FT                                Rule:MF_00009}.
FT   METAL       136    136       Zinc; catalytic. {ECO:0000255|HAMAP-
FT                                Rule:MF_00009}.
SQ   SEQUENCE   173 AA;  19617 MW;  3E015DF3D9AD0B58 CRC64;
     MTALDIQISV EEGDWPSEDE LQGLSTRILD VTVAFLIAEE KQPFPDDPPE LSLVFTDDQS
     IREINAEWRN QDKPTNVLSF PAFPVTPGNM PGPMLGDIIV AYETLEREAA EMEKPFEEHL
     THLLVHGFLH LFGYDHIEDD EAERMEGLET RILARLGLSD PYGDQPRIDS LEQ
//

If you have problems or comments...

PBIL Back to PBIL home page