(data stored in ACNUC7421 zone)

SWISSPROT: C6AYF1_RHILS

ID   C6AYF1_RHILS            Unreviewed;       519 AA.
AC   C6AYF1;
DT   01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   01-SEP-2009, sequence version 1.
DT   08-MAY-2019, entry version 66.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN   OrderedLocusNames=Rleg_0064 {ECO:0000313|EMBL:ACS54375.1};
OS   Rhizobium leguminosarum bv. trifolii (strain WSM1325).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
OX   NCBI_TaxID=395491 {ECO:0000313|EMBL:ACS54375.1, ECO:0000313|Proteomes:UP000002256};
RN   [1] {ECO:0000313|EMBL:ACS54375.1, ECO:0000313|Proteomes:UP000002256}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=WSM1325 {ECO:0000313|EMBL:ACS54375.1,
RC   ECO:0000313|Proteomes:UP000002256};
RX   PubMed=21304718;
RA   Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K.,
RA   Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M.,
RA   Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N.,
RA   Melino V., Denton M., Yates R., Howieson J.;
RT   "Complete genome sequence of Rhizobium leguminosarum bv. trifolii
RT   strain WSM1325, an effective microsymbiont of annual Mediterranean
RT   clovers.";
RL   Stand. Genomic Sci. 2:347-356(2010).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|PIRNR:PIRNR000774}.
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DR   EMBL; CP001622; ACS54375.1; -; Genomic_DNA.
DR   RefSeq; WP_012755805.1; NC_012850.1.
DR   EnsemblBacteria; ACS54375; ACS54375; Rleg_0064.
DR   KEGG; rlg:Rleg_0064; -.
DR   HOGENOM; HOG000071904; -.
DR   KO; K03092; -.
DR   OMA; VTTQKFM; -.
DR   OrthoDB; 1906842at2; -.
DR   BioCyc; RLEG395491:GHX2-64-MONOMER; -.
DR   Proteomes; UP000002256; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.1330; -; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   PANTHER; PTHR32248; PTHR32248; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; C6AYF1.
DR   SWISS-2DPAGE; C6AYF1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002256};
KW   DNA-binding {ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000774};
KW   Sigma factor {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN      151    337       Sigma54_CBD. {ECO:0000259|Pfam:PF04963}.
FT   DOMAIN      349    508       Sigma54_DBD. {ECO:0000259|Pfam:PF04552}.
SQ   SEQUENCE   519 AA;  57402 MW;  AB34750EB7A75D16 CRC64;
     MALSANLFLR QTQSLVMTPQ LMQSIQLLQM THFELNQFIA LEVEKNPLLE FPSNDGEAGG
     ERGEAEDGEY AHQPEDAGSD DGYDNRTEAL SSDWYDNGGS ASTSRLNDEL DANYTNVFPD
     DGAPQRLDAP ELVSQWKSMP GSGEGADYDL DDFVAGQVSL RDHLAQQIPF VLPDMADRLI
     AQNFVDQLDD CGYLQADIVE AGERLGTSLA QAERVLATLQ SLDPPGVFAR SLAECLAIQL
     KQKDRYDPAM QALVENLELL ARRDFATLKR LCGVDEEDLL DMLGEIRQLN PKPGSGFEAG
     ISEAIMPDVV VRASSDGGWL VELNPDTLPR VLVNQSYFSR VTKNGEDHAF LSDCLQTANW
     LTRSLDQRAK TIMKVASEIV RQQDAFLLHG VDYLRPLNLK TVAEAIKMHE STVSRVTSNK
     YMLTPRGLFE LKYFFTVSIS AVAGGDSHSA EAVRHKIRAL ILQESPEAVL SDDDIVDMLK
     KGGVDLARRT VAKYREAMNI ASSVQRRREK RALAKVAGF
//

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