(data stored in ACNUC7421 zone)

SWISSPROT: C6WDP1_ACTMD

ID   C6WDP1_ACTMD            Unreviewed;       489 AA.
AC   C6WDP1;
DT   22-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   22-SEP-2009, sequence version 1.
DT   08-MAY-2019, entry version 60.
DE   SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU34036.1};
GN   OrderedLocusNames=Amir_0062 {ECO:0000313|EMBL:ACU34036.1};
OS   Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU
OS   3971).
OC   Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
OC   Actinosynnema.
OX   NCBI_TaxID=446462 {ECO:0000313|EMBL:ACU34036.1, ECO:0000313|Proteomes:UP000002213};
RN   [1] {ECO:0000313|EMBL:ACU34036.1, ECO:0000313|Proteomes:UP000002213}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971
RC   {ECO:0000313|Proteomes:UP000002213};
RX   PubMed=21304636; DOI=10.4056/sigs.21137;
RA   Land M., Lapidus A., Mayilraj S., Chen F., Copeland A., Del Rio T.G.,
RA   Nolan M., Lucas S., Tice H., Cheng J.F., Chertkov O., Bruce D.,
RA   Goodwin L., Pitluck S., Rohde M., Goker M., Pati A., Ivanova N.,
RA   Mavromatis K., Chen A., Palaniappan K., Hauser L., Chang Y.J.,
RA   Jeffries C.C., Brettin T., Detter J.C., Han C., Chain P.,
RA   Tindall B.J., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P.,
RA   Kyrpides N.C., Klenk H.P.;
RT   "Complete genome sequence of Actinosynnema mirum type strain (101).";
RL   Stand. Genomic Sci. 1:46-53(2009).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS01160068}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP001630; ACU34036.1; -; Genomic_DNA.
DR   STRING; 446462.Amir_0062; -.
DR   EnsemblBacteria; ACU34036; ACU34036; Amir_0062.
DR   KEGG; ami:Amir_0062; -.
DR   eggNOG; ENOG4107VIT; Bacteria.
DR   eggNOG; ENOG410ZF7D; LUCA.
DR   OMA; RYARTCC; -.
DR   Proteomes; UP000002213; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR027383; Znf_put.
DR   PANTHER; PTHR43133; PTHR43133; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF13490; zf-HC2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; C6WDP1.
DR   SWISS-2DPAGE; C6WDP1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002213};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002213};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       40     99       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      204    237       zf-HC2. {ECO:0000259|Pfam:PF13490}.
SQ   SEQUENCE   489 AA;  50228 MW;  D7D2875A613C5724 CRC64;
     MAIGARLGLE VPGGMADEAD VDLELLARVR AGDDAAFGEL YSRHADAVRR FALRHVREHA
     EADDLAAEAF FRVLQAIRRG SGPTEHVRTY LLTTARRVAW EWSGRRRDVP VEDEELSRRV
     EPFPDATAGR AEHTLISRAF TSLPERWRSV LWQVEVEGVR PSAVAPAFGL SPNAMAALAR
     RAREGLRAAY LQAHLADDRG PRACHSVVAK LGAYTAGGVQ GAEQARIRKH LRTCSSCNAL
     HAELAEVCSA LRAHAGLLAA PALLSLAFAP EVVAPVAGKV KLALTAASVA AVGVFGVAAG
     ALDGGPGPAL VQPGPYALRT TVDDPLTPRP SVTLTGTATS LPPAGDGAAR PATSNRPSGG
     GGRGSLTGGD RVGPPTGAPP QSGGPQSGEP PTGGPPFGEP ASGEPGSGQS EPPATTSPTP
     GALEDPGTTA LSTPDDPEQS GKEDPEPPGT TTTGQGPDPE PGPSVLQSPE LGITPTTVTL
     HPRTAYPVG
//

If you have problems or comments...

PBIL Back to PBIL home page