(data stored in ACNUC7421 zone)

SWISSPROT: C7PVJ0_CATAD

ID   C7PVJ0_CATAD            Unreviewed;       441 AA.
AC   C7PVJ0;
DT   13-OCT-2009, integrated into UniProtKB/TrEMBL.
DT   13-OCT-2009, sequence version 1.
DT   07-JUN-2017, entry version 57.
DE   RecName: Full=RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716};
GN   OrderedLocusNames=Caci_0394 {ECO:0000313|EMBL:ACU69346.1};
OS   Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC
OS   102108 / JCM 14897).
OC   Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae;
OC   Catenulispora.
OX   NCBI_TaxID=479433 {ECO:0000313|EMBL:ACU69346.1, ECO:0000313|Proteomes:UP000000851};
RN   [1] {ECO:0000313|EMBL:ACU69346.1, ECO:0000313|Proteomes:UP000000851}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897
RC   {ECO:0000313|Proteomes:UP000000851};
RX   PubMed=21304647;
RA   Copeland A., Lapidus A., Glavina Del Rio T., Nolan M., Lucas S.,
RA   Chen F., Tice H., Cheng J.F., Bruce D., Goodwin L., Pitluck S.,
RA   Mikhailova N., Pati A., Ivanova N., Mavromatis K., Chen A.,
RA   Palaniappan K., Chain P., Land M., Hauser L., Chang Y.J.,
RA   Jeffries C.D., Chertkov O., Brettin T., Detter J.C., Han C., Ali Z.,
RA   Tindall B.J., Goker M., Bristow J., Eisen J.A., Markowitz V.,
RA   Hugenholtz P., Kyrpides N.C., Klenk H.P.;
RT   "Complete genome sequence of Catenulispora acidiphila type strain (ID
RT   139908).";
RL   Stand. Genomic Sci. 1:119-125(2009).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|RuleBase:RU000716, ECO:0000256|SAAS:SAAS00565917}.
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DR   EMBL; CP001700; ACU69346.1; -; Genomic_DNA.
DR   RefSeq; WP_012784641.1; NC_013131.1.
DR   ProteinModelPortal; C7PVJ0; -.
DR   STRING; 479433.Caci_0394; -.
DR   PRIDE; C7PVJ0; -.
DR   EnsemblBacteria; ACU69346; ACU69346; Caci_0394.
DR   KEGG; cai:Caci_0394; -.
DR   eggNOG; ENOG4106RZF; Bacteria.
DR   eggNOG; ENOG410ZB7R; LUCA.
DR   HOGENOM; HOG000220479; -.
DR   KO; K03088; -.
DR   OMA; RRTEWAP; -.
DR   OrthoDB; POG091H04ZH; -.
DR   Proteomes; UP000000851; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR009959; Cyclase_SnoaL-like_dom.
DR   InterPro; IPR032710; NTF2-like_dom.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014305; RNA_pol_sigma-G_actinobac.
DR   InterPro; IPR000838; RNA_pol_sigma70_ECF_CS.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   Pfam; PF12680; SnoaL_2; 1.
DR   SUPFAM; SSF54427; SSF54427; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   TIGRFAMs; TIGR02960; SigX5; 1.
DR   PROSITE; PS01063; SIGMA70_ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; C7PVJ0.
DR   SWISS-2DPAGE; C7PVJ0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000851};
KW   DNA-binding {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000851};
KW   Sigma factor {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN      114    181       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      237    286       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
FT   DOMAIN      310    411       Cyclase_SnoaL-like_dom.
FT                                {ECO:0000259|Pfam:PF12680}.
SQ   SEQUENCE   441 AA;  49419 MW;  C6ADAF8EFCFAF0CB CRC64;
     MKARSCQVCG AALSDRGRGR TSVYCSAACR QRAYRLRHTT ADQSAADVLA EIERQVRTLA
     LRPPQSFRTD ADALATTVRR LRRLAQNVTP EPVTKSAAEE QPPQLAGEPG FAALVEPHRK
     WLHLHCYRMA GSYDDAEDLV QETLLKAWRD RSGFEGRAAA RTWLYRIATN VCIDHLRRTG
     RRPQRYESTA TSGAAEPPER MAWLQPYPDQ LLDEAVAEDE HPEAAAVSRE TMELVFLATL
     QHLPPRQRAV LIFRDVLGRP AEETATLMDM SVAAANSALQ RARQTLRERL PQRRTDWTRG
     DHSRQEQEIV RRYMAAAERS DVSMMADLLS ADVLVTMPPN PVWFAGRDAL LTQIGPLFDR
     TSPGYFGRWR HLPVGANRLP AVAGYVQRPG TSVFRAQMVD VLRIEAGQIM EITTFEAHLV
     AAFGLPLTLP MTDRPGARPT L
//

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