(data stored in ACNUC7421 zone)

SWISSPROT: D1CDK4_THET1

ID   D1CDK4_THET1            Unreviewed;       149 AA.
AC   D1CDK4;
DT   19-JAN-2010, integrated into UniProtKB/TrEMBL.
DT   19-JAN-2010, sequence version 1.
DT   08-MAY-2019, entry version 60.
DE   RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00309628};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};
GN   OrderedLocusNames=Tter_0088 {ECO:0000313|EMBL:ACZ41010.1};
OS   Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).
OC   Bacteria; Thermobaculum.
OX   NCBI_TaxID=525904 {ECO:0000313|EMBL:ACZ41010.1, ECO:0000313|Proteomes:UP000000323};
RN   [1] {ECO:0000313|EMBL:ACZ41010.1, ECO:0000313|Proteomes:UP000000323}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-798 / YNP1 {ECO:0000313|Proteomes:UP000000323};
RX   PubMed=21304745;
RA   Kiss H., Cleland D., Lapidus A., Lucas S., Del Rio T.G., Nolan M.,
RA   Tice H., Han C., Goodwin L., Pitluck S., Liolios K., Ivanova N.,
RA   Mavromatis K., Ovchinnikova G., Pati A., Chen A., Palaniappan K.,
RA   Land M., Hauser L., Chang Y.J., Jeffries C.D., Lu M., Brettin T.,
RA   Detter J.C., Goker M., Tindall B.J., Beck B., McDermott T.R.,
RA   Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P.,
RA   Kyrpides N.C., Klenk H.P., Cheng J.F.;
RT   "Complete genome sequence of 'Thermobaculum terrenum' type strain
RT   (YNP1).";
RL   Stand. Genomic Sci. 3:153-162(2010).
RN   [2] {ECO:0000313|Proteomes:UP000000323}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-798 / YNP1 {ECO:0000313|Proteomes:UP000000323};
RX   DOI=10.4056/sigs.1153107;
RA   Kiss H., Cleland D., Lapidus A., Lucas S., Glavina Del Rio T.,
RA   Nolan M., Tice H., Han C., Goodwin L., Pitluck S., Liolios K.,
RA   Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Chen A.,
RA   Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Lu M.,
RA   Brettin T., Detter J., Goker M., Tindall B., Beck B., McDermott T.,
RA   Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P.,
RA   Kyrpides N., Klenk H., Cheng J.;
RT   "Complete genome sequence of Thermobaculum terrenum type strain
RT   (YNP1T).";
RL   Stand. Genomic Sci. 3:153-162(2010).
CC   -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end
CC       of pre-16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00651,
CC       ECO:0000256|SAAS:SAAS00309629}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00651,
CC       ECO:0000256|SAAS:SAAS00086489}.
CC   -!- SIMILARITY: Belongs to the YqgF HJR family. {ECO:0000256|HAMAP-
CC       Rule:MF_00651}.
CC   -!- SIMILARITY: Belongs to the YqgF nuclease family.
CC       {ECO:0000256|SAAS:SAAS00570550}.
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DR   EMBL; CP001825; ACZ41010.1; -; Genomic_DNA.
DR   STRING; 525904.Tter_0088; -.
DR   EnsemblBacteria; ACZ41010; ACZ41010; Tter_0088.
DR   KEGG; ttr:Tter_0088; -.
DR   eggNOG; ENOG4108Z08; Bacteria.
DR   eggNOG; COG0816; LUCA.
DR   HOGENOM; HOG000016953; -.
DR   KO; K07447; -.
DR   OMA; DERMSTV; -.
DR   Proteomes; UP000000323; Chromosome 1.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.420.140; -; 1.
DR   HAMAP; MF_00651; Nuclease_YqgF; 1.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR005227; YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR33317; PTHR33317; 1.
DR   Pfam; PF03652; RuvX; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   TIGRFAMs; TIGR00250; RNAse_H_YqgF; 1.
PE   3: Inferred from homology;
DR   PRODOM; D1CDK4.
DR   SWISS-2DPAGE; D1CDK4.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000323};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00459958};
KW   Hydrolase {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00086516};
KW   Nuclease {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00459935};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000323};
KW   Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00309597}.
FT   DOMAIN        1    101       YqgFc. {ECO:0000259|SMART:SM00732}.
SQ   SEQUENCE   149 AA;  16678 MW;  701A8278A7C72AF9 CRC64;
     MVVMGIDPGR KRIGIALSDP TGLLATAYKV IHRTTSDRDL EEIRRIAEHE NVEKIVVGLP
     LHMSGYEGEE AVRARELAKQ IETATGLPVE LVDERLTSVE AERRLLESRR KLGKLGRKKL
     AIDAEAAAVL LQDYLDQERL RQRAIDSSL
//

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