(data stored in SCRATCH3701 zone)

SWISSPROT: D5E9S0_METMS

ID   D5E9S0_METMS            Unreviewed;       104 AA.
AC   D5E9S0;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   11-DEC-2019, entry version 59.
DE   SubName: Full=DNA-directed RNA polymerase, subunit M {ECO:0000313|EMBL:ADE35921.1};
DE            EC=2.7.7.6 {ECO:0000313|EMBL:ADE35921.1};
GN   OrderedLocusNames=Mmah_0389 {ECO:0000313|EMBL:ADE35921.1};
OS   Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP).
OC   Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia;
OC   Methanosarcinales; Methanosarcinaceae; Methanohalophilus.
OX   NCBI_TaxID=547558 {ECO:0000313|EMBL:ADE35921.1, ECO:0000313|Proteomes:UP000001059};
RN   [1] {ECO:0000313|EMBL:ADE35921.1, ECO:0000313|Proteomes:UP000001059}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 35705 / DSM 5219 / SLP
RC   {ECO:0000313|Proteomes:UP000001059};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA   Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N.,
RA   Lykidis A., Saunders E., Brettin T., Detter J.C., Han C., Land M.,
RA   Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D.,
RA   Spring S., Schneider S., Schroeder M., Klenk H.-P., Eisen J.A.;
RT   "The complete genome of Methanohalophilus mahii DSM 5219.";
RL   Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11
CC       RNA polymerase family. {ECO:0000256|PIRNR:PIRNR005586,
CC       ECO:0000256|RuleBase:RU003474}.
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DR   EMBL; CP001994; ADE35921.1; -; Genomic_DNA.
DR   RefSeq; WP_013036864.1; NC_014002.1.
DR   EnsemblBacteria; ADE35921; ADE35921; Mmah_0389.
DR   GeneID; 8982524; -.
DR   KEGG; mmh:Mmah_0389; -.
DR   eggNOG; arCOG00579; Archaea.
DR   eggNOG; COG1594; LUCA.
DR   HOGENOM; HOG000228132; -.
DR   KO; K03057; -.
DR   OMA; MEFCDEC; -.
DR   OrthoDB; 121393at2157; -.
DR   BioCyc; MMAH547558:G1GHT-386-MONOMER; -.
DR   Proteomes; UP000001059; Chromosome.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   InterPro; IPR019761; DNA-dir_RNA_pol-M_15_CS.
DR   InterPro; IPR001529; DNA-dir_RNA_pol_M/15kDasu.
DR   InterPro; IPR012164; Rpa12/Rpb9/Rpc10/TFS.
DR   InterPro; IPR006288; TFS.
DR   InterPro; IPR001222; Znf_TFIIS.
DR   Pfam; PF02150; RNA_POL_M_15KD; 1.
DR   Pfam; PF01096; TFIIS_C; 1.
DR   PIRSF; PIRSF005586; RNApol_RpoM; 1.
DR   SMART; SM00661; RPOL9; 1.
DR   SMART; SM00440; ZnF_C2C2; 1.
DR   TIGRFAMs; TIGR01384; TFS_arch; 1.
DR   PROSITE; PS01030; RNA_POL_M_15KD; 1.
DR   PROSITE; PS00466; ZF_TFIIS_1; 1.
DR   PROSITE; PS51133; ZF_TFIIS_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; D5E9S0.
DR   SWISS-2DPAGE; D5E9S0.
KW   DNA-directed RNA polymerase {ECO:0000313|EMBL:ADE35921.1};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00472,
KW   ECO:0000256|RuleBase:RU003474};
KW   Nucleotidyltransferase {ECO:0000313|EMBL:ADE35921.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001059};
KW   Transcription {ECO:0000256|PIRNR:PIRNR005586,
KW   ECO:0000256|RuleBase:RU003474}; Transferase {ECO:0000313|EMBL:ADE35921.1};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00472};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00472}.
FT   DOMAIN          61..101
FT                   /note="TFIIS-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51133"
FT   ZN_FING         61..101
FT                   /note="TFIIS-type"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00472"
SQ   SEQUENCE   104 AA;  12266 MW;  E4D6D40B619128F7 CRC64;
     MEFCPKCKSM MFPSDGDLKC RKCGYEKSRE EGAETMVSKT KRDEREVTVL EENVDEGLPT
     TLAQCPECGN NKAYWWMRQL RSADESETRF FKCTKCSYTW REYD
//

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