(data stored in ACNUC7421 zone)

SWISSPROT: E3J9V6_FRAIE

ID   E3J9V6_FRAIE            Unreviewed;       195 AA.
AC   E3J9V6;
DT   11-JAN-2011, integrated into UniProtKB/TrEMBL.
DT   11-JAN-2011, sequence version 1.
DT   08-MAY-2019, entry version 48.
DE   SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADP78518.1};
GN   OrderedLocusNames=FraEuI1c_0435 {ECO:0000313|EMBL:ADP78518.1};
OS   Frankia inefficax (strain DSM 45817 / CECT 9037 / EuI1c).
OC   Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.
OX   NCBI_TaxID=298654 {ECO:0000313|EMBL:ADP78518.1, ECO:0000313|Proteomes:UP000002484};
RN   [1] {ECO:0000313|EMBL:ADP78518.1, ECO:0000313|Proteomes:UP000002484}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 45817 / CECT 9037 / EuI1c
RC   {ECO:0000313|Proteomes:UP000002484};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L.,
RA   Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N.,
RA   Beauchemin N., Sen A., Sur S.A., Gtari M., Wall L., Tisa L., Woyke T.;
RT   "Complete sequence of Frankia sp. EuI1c.";
RL   Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS01160068}.
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DR   EMBL; CP002299; ADP78518.1; -; Genomic_DNA.
DR   RefSeq; WP_013421640.1; NC_014666.1.
DR   STRING; 298654.FraEuI1c_0435; -.
DR   EnsemblBacteria; ADP78518; ADP78518; FraEuI1c_0435.
DR   KEGG; fri:FraEuI1c_0435; -.
DR   eggNOG; ENOG4108VRT; Bacteria.
DR   eggNOG; ENOG4111JAB; LUCA.
DR   HOGENOM; HOG000094755; -.
DR   OMA; RWPRIRG; -.
DR   OrthoDB; 1914729at2; -.
DR   BioCyc; FSP298654:G1GOT-434-MONOMER; -.
DR   Proteomes; UP000002484; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014325; RNA_pol_sigma-E_actinobac.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   PANTHER; PTHR43133; PTHR43133; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02983; SigE-fam_strep; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; E3J9V6.
DR   SWISS-2DPAGE; E3J9V6.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002484};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002484};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       16     77       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      105    155       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   195 AA;  21539 MW;  4BEB08141A392616 CRC64;
     MDIEDDAFDD YFVARLPGLL RFAYLLTGDF GEAEDLTQTA LARTFRVWKR VRSHDRPDAY
     VRRVMVNANA RRFRRRRPHQ VLVAHPPDRP GRSPELGAVE DRAGLVQALA SLPQRQRAVV
     ILRYCDDLAE TEVAALLGCS VGTVKSQASK GLAKLRTHPA LSDLGPSSRA LAAASGSTAP
     RLTDPRVTAI RREAQ
//

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