(data stored in ACNUC1104 zone)

SWISSPROT: E6UZ14_VARPE

ID   E6UZ14_VARPE            Unreviewed;       244 AA.
AC   E6UZ14;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 49.
DE   SubName: Full=Regulatory protein TetR {ECO:0000313|EMBL:ADU34343.1};
GN   OrderedLocusNames=Varpa_0121 {ECO:0000313|EMBL:ADU34343.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34343.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34343.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34343.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP002417; ADU34343.1; -; Genomic_DNA.
DR   RefSeq; WP_013538590.1; NC_014931.1.
DR   STRING; 595537.Varpa_0121; -.
DR   EnsemblBacteria; ADU34343; ADU34343; Varpa_0121.
DR   GeneID; 29718354; -.
DR   KEGG; vpe:Varpa_0121; -.
DR   eggNOG; ENOG4105P59; Bacteria.
DR   eggNOG; COG1309; LUCA.
DR   HOGENOM; HOG000259746; -.
DR   OMA; TSMRQIT; -.
DR   OrthoDB; 2089619at2; -.
DR   BioCyc; VPAR595537:G1GQO-119-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR001647; HTH_TetR.
DR   InterPro; IPR041586; PsrA_TetR_C.
DR   InterPro; IPR036271; Tet_transcr_reg_TetR-rel_C_sf.
DR   Pfam; PF17939; TetR_C_30; 1.
DR   Pfam; PF00440; TetR_N; 1.
DR   PRINTS; PR00455; HTHTETR.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF48498; SSF48498; 1.
DR   PROSITE; PS50977; HTH_TETR_2; 1.
PE   4: Predicted;
DR   PRODOM; E6UZ14.
DR   SWISS-2DPAGE; E6UZ14.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00335,
KW   ECO:0000256|SAAS:SAAS00132209};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Transcription {ECO:0000256|SAAS:SAAS00131596};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00132066}.
FT   DOMAIN       25     85       HTH tetR-type. {ECO:0000259|PROSITE:
FT                                PS50977}.
FT   DNA_BIND     48     67       H-T-H motif. {ECO:0000256|PROSITE-
FT                                ProRule:PRU00335}.
SQ   SEQUENCE   244 AA;  27097 MW;  CE1A58E89148F368 CRC64;
     MNTRTPTARR SAPRAAAITA EAGRPDRRQA ILLAAEKLFA QHGYHAVTIR QIAEEAGVPL
     ALVGYYFGPK HELFHAIFEH WSHTIEERLT RLAEVNNDPD DACTLPSIIE AFTTPVLALR
     ASAEGEYYAL LVARELYHAT EEADRVLRGY FDPLAAAYID ALHVALPHAT RGQVAWGYQF
     ALGALLHHLN DSRIERLSRG ENKRADPAVA PMLVNFIVGG LRAALPKPKT PRTQQKTPTR
     RQKT
//

If you have problems or comments...

PBIL Back to PBIL home page