(data stored in ACNUC1104 zone)

SWISSPROT: E6V086_VARPE

ID   E6V086_VARPE            Unreviewed;       631 AA.
AC   E6V086;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 51.
DE   SubName: Full=ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ADU34400.1};
GN   OrderedLocusNames=Varpa_0178 {ECO:0000313|EMBL:ADU34400.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34400.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34400.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34400.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP002417; ADU34400.1; -; Genomic_DNA.
DR   RefSeq; WP_013538647.1; NC_014931.1.
DR   STRING; 595537.Varpa_0178; -.
DR   EnsemblBacteria; ADU34400; ADU34400; Varpa_0178.
DR   GeneID; 29717827; -.
DR   KEGG; vpe:Varpa_0178; -.
DR   eggNOG; ENOG4105C9U; Bacteria.
DR   eggNOG; COG0514; LUCA.
DR   HOGENOM; HOG000044388; -.
DR   KO; K03654; -.
DR   OMA; QDMFLME; -.
DR   OrthoDB; 54580at2; -.
DR   BioCyc; VPAR595537:G1GQO-179-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0043140; F:ATP-dependent 3'-5' DNA helicase activity; IEA:InterPro.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   GO; GO:0006260; P:DNA replication; IEA:InterPro.
DR   GO; GO:0009432; P:SOS response; IEA:InterPro.
DR   CDD; cd00079; HELICc; 1.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR004589; DNA_helicase_ATP-dep_RecQ.
DR   InterPro; IPR006293; DNA_helicase_ATP-dep_RecQ_bac.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR010997; HRDC-like_sf.
DR   InterPro; IPR002121; HRDC_dom.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR032284; RecQ_Zn-bd.
DR   InterPro; IPR018982; RQC_domain.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF00570; HRDC; 1.
DR   Pfam; PF16124; RecQ_Zn_bind; 1.
DR   Pfam; PF09382; RQC; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SMART; SM00341; HRDC; 1.
DR   SMART; SM00956; RQC; 1.
DR   SUPFAM; SSF47819; SSF47819; 1.
DR   SUPFAM; SSF52540; SSF52540; 2.
DR   TIGRFAMs; TIGR01389; recQ; 1.
DR   TIGRFAMs; TIGR00614; recQ_fam; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS50967; HRDC; 1.
PE   4: Predicted;
DR   PRODOM; E6V086.
DR   SWISS-2DPAGE; E6V086.
KW   ATP-binding {ECO:0000313|EMBL:ADU34400.1};
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   Helicase {ECO:0000313|EMBL:ADU34400.1};
KW   Hydrolase {ECO:0000313|EMBL:ADU34400.1};
KW   Nucleotide-binding {ECO:0000313|EMBL:ADU34400.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917}.
FT   DOMAIN       39    215       Helicase ATP-binding.
FT                                {ECO:0000259|PROSITE:PS51192}.
FT   DOMAIN      236    387       Helicase C-terminal.
FT                                {ECO:0000259|PROSITE:PS51194}.
FT   DOMAIN      558    631       HRDC. {ECO:0000259|PROSITE:PS50967}.
SQ   SEQUENCE   631 AA;  69254 MW;  277DB62E834D780A CRC64;
     MSSLAPHPLD APGSSTSPAE ILHEVFGYSQ FRGAQQDIVD HVVGGGDALV LMPTGGGKSL
     CYQIPAIARQ RAGRGVAVVV SPLIALMHDQ VGALHEAGVN AAFLNSTLDW EQTQDVERRM
     LRGEITLLYA APERVNTPRF LSQLDSLKER GKLSLFAIDE AHCVSQWGHD FRPEYRALTV
     LHERYPGVPR IALTATADDL TRADIVERLQ LEEARQFVSS FDRPNIRYTI VEKKDATTQL
     LRFIEREHEG DAGVVYCQSR KRVEDLATTL QGAGINALPY HAGLDAAVRQ KHQDRFLREE
     GIVMVATIAF GMGIDKPDVR FVGHLDMPKN IEGYYQETGR AGRDGAPADA WMTYGLNDVV
     NQRRMIDESP AGEEFKQVMR GKLDALLSLA EASDCRRVRL LGYFGEKSTP CGNCDNCLNP
     PNVWDGTDAA RKLLSTIYRV QQLSGISFGA GHIMDILRGK ETEKVKQFGH ERISTFGLGA
     EFSEVQLRGV LRQLIATGAL AVDAEAFNTL KLTEGSRAVL KGEANVTLRE SISSPAERKP
     RREKVAKGAP SPAAAKLDDT GKKRFEALKA WRAEVAKEHN LPAYVIFHDA TLASIAERAP
     ATLEDLQGIS GIGTKKLEAY GTEVLRVCSA F
//

If you have problems or comments...

PBIL Back to PBIL home page