(data stored in ACNUC1104 zone)

SWISSPROT: E6V5E7_VARPE

ID   E6V5E7_VARPE            Unreviewed;       869 AA.
AC   E6V5E7;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 48.
DE   SubName: Full=DNA ligase D {ECO:0000313|EMBL:ADU34753.1};
GN   OrderedLocusNames=Varpa_0532 {ECO:0000313|EMBL:ADU34753.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34753.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34753.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34753.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
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DR   EMBL; CP002417; ADU34753.1; -; Genomic_DNA.
DR   RefSeq; WP_013538999.1; NC_014931.1.
DR   STRING; 595537.Varpa_0532; -.
DR   EnsemblBacteria; ADU34753; ADU34753; Varpa_0532.
DR   GeneID; 29714935; -.
DR   KEGG; vpe:Varpa_0532; -.
DR   eggNOG; ENOG4105DQE; Bacteria.
DR   eggNOG; COG1793; LUCA.
DR   eggNOG; COG3285; LUCA.
DR   HOGENOM; HOG000222509; -.
DR   KO; K01971; -.
DR   OMA; YMANLGC; -.
DR   OrthoDB; 2061599at2; -.
DR   BioCyc; VPAR595537:G1GQO-535-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
DR   PRODOM; E6V5E7.
DR   SWISS-2DPAGE; E6V5E7.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   Ligase {ECO:0000313|EMBL:ADU34753.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917}.
FT   DOMAIN      334    458       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   869 AA;  95245 MW;  82239A995EB614D1 CRC64;
     MGTTRTASTA RKALSRYHGK RDFSRTPEPK EGGRAGQGVL SFVIQKHHAS RLHYDFRLEL
     DGTLKSWAVP KGPCLDPTVK RMAVHVEDHP ISYADFEGTI PPKQYGAGTV IVWDRGDWLP
     EGGSEADARK ALAAGKLKFE LRGEKLKGHW TLVRMRGKGD EKQEPWLLIK ERDDAARDLA
     DYDVLEEQPA SVLTGRGLDE VDSPPKKAAP AKKAAAKKPE KKAAKKEVKK EVKKKAALPA
     TLQPQLAVLA ASPPSSPDDW LYELKFDGYR LLARIDKGKV RCFTRNGHDW TDKLPVIAKA
     LAKLPTDSAW LDGEITVEGG NGAPDFQALQ NAFDRGATSS IVYWLFDAPF LDGQDLRDEP
     VEERRAHLAR LLGKRPPATL RLSEAFDASP RDLLASSARI GFEGIVGKRK GSPYVSRRSA
     DWIKLKNQQR QEFVIGGYTA PKGSRSGFGA LLLGVHDDKG RLRYCGNVGT GFNADRLADI
     KARLDRLATD DCPFKPMPDG ANAKAQWVKP TLVAEVSFGE WTREDRVRQA VFQGLRTDKP
     ARGIVRERAA PSETSPETST EASTDTPAKK QGARKSMALK ITHADRVIDA KSGITKGELA
     AYYDAVGTLM LPHLRGRPVS LVRAPDGVGG ELFFQKHIQN REIPGVNLLD PALDPGHEPL
     LQIDSKTGLI GAAQMNVIEL HTWNATSRAI DRPDRMTFDL DPGEGVGWPQ IQEATLLVRT
     LLDELGLPSF LKTSGGKGMH VVVPIRRQYG WDEVKGFSQA VVVHLAKTIP DRFVAKSGPR
     NRVGKVFVDY LRNGFGATTV SAWSARSRPG LGVSVPVAWE ELPALTGAAQ WTVANVAERL
     ATGNKPWAAM ERSRKGIAAA MKMLDYKPA
//

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