(data stored in ACNUC13479 zone)

SWISSPROT: PP360_ARATH

ID   PP360_ARATH             Reviewed;         729 AA.
AC   Q9LFC5;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   08-MAY-2019, entry version 103.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g01110;
GN   OrderedLocusNames=At5g01110; ORFNames=F7J8_90;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
RA   Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
RA   Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
RA   Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
RA   Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
RA   Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
RA   Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
RA   Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
RA   Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
RA   Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
RA   Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
RA   Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
RA   Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
RA   Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
RA   van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
RA   Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
RA   Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
RA   Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana
RT   reference genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA   Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA   Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA   Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA   Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA   Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA   Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA   Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA   Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA   Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA   Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A.,
RA   Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P.,
RA   Szurek B., Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Arabidopsis PPR Protein Database;
CC       URL="http://www.plantenergy.uwa.edu.au/applications/ppr/ppr.php";
DR   EMBL; AL137189; CAB69839.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED90300.1; -; Genomic_DNA.
DR   EMBL; BT005783; AAO64186.1; -; mRNA.
DR   EMBL; AK228473; BAF00399.1; -; mRNA.
DR   PIR; T45951; T45951.
DR   RefSeq; NP_195731.1; NM_120189.5.
DR   SMR; Q9LFC5; -.
DR   PaxDb; Q9LFC5; -.
DR   PRIDE; Q9LFC5; -.
DR   EnsemblPlants; AT5G01110.1; AT5G01110.1; AT5G01110.
DR   GeneID; 831824; -.
DR   Gramene; AT5G01110.1; AT5G01110.1; AT5G01110.
DR   KEGG; ath:AT5G01110; -.
DR   Araport; AT5G01110; -.
DR   TAIR; locus:2150024; AT5G01110.
DR   eggNOG; KOG4197; Eukaryota.
DR   eggNOG; ENOG410Z7Z7; LUCA.
DR   HOGENOM; HOG000115640; -.
DR   InParanoid; Q9LFC5; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9LFC5; -.
DR   PRO; PR:Q9LFC5; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9LFC5; baseline and differential.
DR   Genevisible; Q9LFC5; AT.
DR   Gene3D; 1.25.40.10; -; 6.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 2.
DR   Pfam; PF12854; PPR_1; 2.
DR   Pfam; PF13041; PPR_2; 6.
DR   SUPFAM; SSF48452; SSF48452; 1.
DR   TIGRFAMs; TIGR00756; PPR; 15.
DR   PROSITE; PS51375; PPR; 17.
PE   2: Evidence at transcript level;
DR   PRODOM; Q9LFC5.
DR   SWISS-2DPAGE; Q9LFC5.
KW   Complete proteome; Reference proteome; Repeat.
FT   CHAIN         1    729       Pentatricopeptide repeat-containing
FT                                protein At5g01110.
FT                                /FTId=PRO_0000363497.
FT   REPEAT      112    147       PPR 1.
FT   REPEAT      164    198       PPR 2.
FT   REPEAT      199    233       PPR 3.
FT   REPEAT      234    268       PPR 4.
FT   REPEAT      269    303       PPR 5.
FT   REPEAT      304    338       PPR 6.
FT   REPEAT      339    373       PPR 7.
FT   REPEAT      374    408       PPR 8.
FT   REPEAT      409    443       PPR 9.
FT   REPEAT      444    478       PPR 10.
FT   REPEAT      479    513       PPR 11.
FT   REPEAT      514    548       PPR 12.
FT   REPEAT      549    583       PPR 13.
FT   REPEAT      584    618       PPR 14.
FT   REPEAT      619    649       PPR 15.
FT   REPEAT      656    690       PPR 16.
FT   REPEAT      691    725       PPR 17.
FT   COMPBIAS     35     52       Poly-Ser.
SQ   SEQUENCE   729 AA;  81881 MW;  30A377F5AD3878C4 CRC64;
     MIVHRIIPSR VKDPLTRFKP LKNLTTSSSP VFEPSSSSSS SSSSASFSVS DSFLVEKICF
     SLKQGNNNVR NHLIRLNPLA VVEVLYRCRN DLTLGQRFVD QLGFHFPNFK HTSLSLSAMI
     HILVRSGRLS DAQSCLLRMI RRSGVSRLEI VNSLDSTFSN CGSNDSVFDL LIRTYVQARK
     LREAHEAFTL LRSKGFTVSI DACNALIGSL VRIGWVELAW GVYQEISRSG VGINVYTLNI
     MVNALCKDGK MEKVGTFLSQ VQEKGVYPDI VTYNTLISAY SSKGLMEEAF ELMNAMPGKG
     FSPGVYTYNT VINGLCKHGK YERAKEVFAE MLRSGLSPDS TTYRSLLMEA CKKGDVVETE
     KVFSDMRSRD VVPDLVCFSS MMSLFTRSGN LDKALMYFNS VKEAGLIPDN VIYTILIQGY
     CRKGMISVAM NLRNEMLQQG CAMDVVTYNT ILHGLCKRKM LGEADKLFNE MTERALFPDS
     YTLTILIDGH CKLGNLQNAM ELFQKMKEKR IRLDVVTYNT LLDGFGKVGD IDTAKEIWAD
     MVSKEILPTP ISYSILVNAL CSKGHLAEAF RVWDEMISKN IKPTVMICNS MIKGYCRSGN
     ASDGESFLEK MISEGFVPDC ISYNTLIYGF VREENMSKAF GLVKKMEEEQ GGLVPDVFTY
     NSILHGFCRQ NQMKEAEVVL RKMIERGVNP DRSTYTCMIN GFVSQDNLTE AFRIHDEMLQ
     RGFSPDDKF
//

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