(data stored in ACNUC13479 zone)

SWISSPROT: LMBD2_ARATH

ID   LMBD2_ARATH             Reviewed;         509 AA.
AC   Q9M028;
DT   24-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   05-JUL-2017, entry version 74.
DE   RecName: Full=LIMR family protein At5g01460;
GN   OrderedLocusNames=At5g01460; ORFNames=T10O8.170;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
RA   Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
RA   Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
RA   Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
RA   Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
RA   Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
RA   Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
RA   Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
RA   Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
RA   Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
RA   Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
RA   Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
RA   Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
RA   Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
RA   van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
RA   Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
RA   Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
RA   Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA   Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA   Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA   Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA   Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA   Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA   Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA   Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA   Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA   Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA   Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
CC   -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC       protein {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the LIMR family. {ECO:0000305}.
DR   EMBL; AL161746; CAB81929.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED90347.1; -; Genomic_DNA.
DR   EMBL; AY072197; AAL60018.1; -; mRNA.
DR   EMBL; AY096440; AAM20080.1; -; mRNA.
DR   PIR; T48168; T48168.
DR   RefSeq; NP_195766.1; NM_120224.4.
DR   UniGene; At.23267; -.
DR   STRING; 3702.AT5G01460.1; -.
DR   SwissPalm; Q9M028; -.
DR   PaxDb; Q9M028; -.
DR   EnsemblPlants; AT5G01460.1; AT5G01460.1; AT5G01460.
DR   GeneID; 831815; -.
DR   Gramene; AT5G01460.1; AT5G01460.1; AT5G01460.
DR   KEGG; ath:AT5G01460; -.
DR   Araport; AT5G01460; -.
DR   TAIR; locus:2179197; AT5G01460.
DR   eggNOG; ENOG410IHNR; Eukaryota.
DR   eggNOG; ENOG410XRDU; LUCA.
DR   HOGENOM; HOG000265403; -.
DR   InParanoid; Q9M028; -.
DR   KO; K14617; -.
DR   OMA; YAYCAMY; -.
DR   OrthoDB; EOG093608S6; -.
DR   PhylomeDB; Q9M028; -.
DR   PRO; PR:Q9M028; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9M028; baseline and differential.
DR   Genevisible; Q9M028; AT.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; IDA:TAIR.
DR   InterPro; IPR006876; LMBR1-like_membr_prot.
DR   Pfam; PF04791; LMBR1; 2.
PE   2: Evidence at transcript level;
DR   PRODOM; Q9M028.
DR   SWISS-2DPAGE; Q9M028.
KW   Coiled coil; Complete proteome; Membrane; Reference proteome;
KW   Transmembrane; Transmembrane helix.
FT   CHAIN         1    509       LIMR family protein At5g01460.
FT                                /FTId=PRO_0000366937.
FT   TRANSMEM      8     28       Helical. {ECO:0000255}.
FT   TRANSMEM     44     64       Helical. {ECO:0000255}.
FT   TRANSMEM     90    110       Helical. {ECO:0000255}.
FT   TRANSMEM    128    148       Helical. {ECO:0000255}.
FT   TRANSMEM    208    228       Helical. {ECO:0000255}.
FT   TRANSMEM    332    352       Helical. {ECO:0000255}.
FT   TRANSMEM    382    402       Helical. {ECO:0000255}.
FT   TRANSMEM    422    442       Helical. {ECO:0000255}.
FT   TRANSMEM    475    495       Helical. {ECO:0000255}.
FT   COILED      251    316       {ECO:0000255}.
SQ   SEQUENCE   509 AA;  56502 MW;  1F539348325F672E CRC64;
     MGDFNLALVI VAIVVCVIVF ISSIYLLVNY QHPDDANQAY FPKFVVVFGL SIAMISILML
     PADVANRHAC RHSIYNGACN LTLPMKDLWL AVYIVDAVLV FFIIPFAMFF YEGDQDKALG
     KRIKSALIWV VTTAVVCALV LGILYGVIGK VDFSVRHLSS ATTTFPTSWQ FSNNQPCIGN
     TARQCSAYTA NAASEKTWSM RTTFPEYVVA LATIVGSVLF TIFGGVGIAC LPLGLITAFI
     RRPKAVITRS QYIKEATELG KKARDLKKAA DALHQEERSG AKGRKWRKNV KAVEKELLQL
     EEDVNLLEEM YPQGEQAETA WAFTVLGYLA KFVLGILGLI VSVAWIAHII IYLLVDPPLS
     PFLNEVFIKL DDVWGLLGTA AFAFFCFYLL LAVIAGAMML GLKLVFITIH PMKWGATLMN
     SFLFNVGLIL LCSISVIQFC ATAFGYYAQA TAAQEIFGHT LQSLRGIKYL YKYNVFQIGF
     VVLAGLTFLY YIAFGWRRKK PSGRFQLST
//

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