(data stored in ACNUC13479 zone)

SWISSPROT: PUB16_ARATH

ID   PUB16_ARATH             Reviewed;         674 AA.
AC   Q9LZW3;
DT   26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   30-AUG-2017, entry version 117.
DE   RecName: Full=U-box domain-containing protein 16;
DE            EC=2.3.2.27;
DE   AltName: Full=Plant U-box protein 16;
DE   AltName: Full=RING-type E3 ubiquitin transferase PUB16 {ECO:0000305};
GN   Name=PUB16; OrderedLocusNames=At5g01830; ORFNames=T20L15_100;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
RA   Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
RA   Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
RA   Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
RA   Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
RA   Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
RA   Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
RA   Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
RA   Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
RA   Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
RA   Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
RA   Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
RA   Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
RA   Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
RA   van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
RA   Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
RA   Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
RA   Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX   PubMed=11495788; DOI=10.1016/S1360-1385(01)01960-4;
RA   Azevedo C., Santos-Rosa M.J., Shirasu K.;
RT   "The U-box protein family in plants.";
RL   Trends Plant Sci. 6:354-358(2001).
RN   [6]
RP   GENE FAMILY ORGANIZATION.
RX   PubMed=14657406; DOI=10.1104/pp.103.029553;
RA   Mudgil Y., Shiu S.-H., Stone S.L., Salt J.N., Goring D.R.;
RT   "A large complement of the predicted Arabidopsis ARM repeat proteins
RT   are members of the U-box E3 ubiquitin ligase family.";
RL   Plant Physiol. 134:59-66(2004).
CC   -!- FUNCTION: Functions as an E3 ubiquitin ligase. {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY: S-ubiquitinyl-[E2 ubiquitin-conjugating
CC       enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-
CC       conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor
CC       protein]-L-lysine.
CC   -!- PATHWAY: Protein modification; protein ubiquitination.
DR   EMBL; AL162351; CAB82753.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED90398.1; -; Genomic_DNA.
DR   EMBL; BT015367; AAU05490.1; -; mRNA.
DR   EMBL; BT015725; AAU45223.1; -; mRNA.
DR   EMBL; AK229397; BAF01259.1; -; mRNA.
DR   PIR; T48204; T48204.
DR   RefSeq; NP_195803.1; NM_120261.4.
DR   UniGene; At.33496; -.
DR   ProteinModelPortal; Q9LZW3; -.
DR   PaxDb; Q9LZW3; -.
DR   PRIDE; Q9LZW3; -.
DR   EnsemblPlants; AT5G01830.1; AT5G01830.1; AT5G01830.
DR   GeneID; 831850; -.
DR   Gramene; AT5G01830.1; AT5G01830.1; AT5G01830.
DR   KEGG; ath:AT5G01830; -.
DR   Araport; AT5G01830; -.
DR   TAIR; locus:2181077; AT5G01830.
DR   eggNOG; ENOG410ITMQ; Eukaryota.
DR   eggNOG; ENOG410XQT6; LUCA.
DR   HOGENOM; HOG000238412; -.
DR   InParanoid; Q9LZW3; -.
DR   OMA; GSEMVAE; -.
DR   OrthoDB; EOG093607ET; -.
DR   PhylomeDB; Q9LZW3; -.
DR   UniPathway; UPA00143; -.
DR   PRO; PR:Q9LZW3; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9LZW3; baseline and differential.
DR   Genevisible; Q9LZW3; AT.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0004842; F:ubiquitin-protein transferase activity; IEA:InterPro.
DR   GO; GO:0010200; P:response to chitin; IEP:TAIR.
DR   Gene3D; 1.25.10.10; -; 1.
DR   Gene3D; 3.30.40.10; -; 1.
DR   InterPro; IPR011989; ARM-like.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR000225; Armadillo.
DR   InterPro; IPR003613; Ubox_domain.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   Pfam; PF00514; Arm; 1.
DR   Pfam; PF04564; U-box; 1.
DR   SMART; SM00185; ARM; 2.
DR   SMART; SM00504; Ubox; 1.
DR   SUPFAM; SSF48371; SSF48371; 1.
DR   PROSITE; PS50176; ARM_REPEAT; 1.
DR   PROSITE; PS51698; U_BOX; 1.
PE   2: Evidence at transcript level;
DR   PRODOM; Q9LZW3.
DR   SWISS-2DPAGE; Q9LZW3.
KW   Complete proteome; Reference proteome; Repeat; Transferase;
KW   Ubl conjugation pathway.
FT   CHAIN         1    674       U-box domain-containing protein 16.
FT                                /FTId=PRO_0000322160.
FT   DOMAIN      273    347       U-box.
FT   REPEAT      399    438       ARM 1.
FT   REPEAT      441    481       ARM 2.
FT   REPEAT      484    523       ARM 3.
SQ   SEQUENCE   674 AA;  73600 MW;  FD91FAED63F415CB CRC64;
     MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS
     LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM QRIKSLIDDC SRVSKLWLLL
     QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR
     RKVTDTIAGI KHQISPDHST LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA
     SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
     RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP
     CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV ARACIAEAGA IPKLVRYLAT
     ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA
     GVSAYRRRLG RKARVVSGLV DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA
     GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
     RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS
     IVVPTPSRIF SPVL
//

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