(data stored in ACNUC23583 zone)

EMBL: AK136901

ID   AK136901; SV 1; linear; mRNA; HTC; MUS; 1628 BP.
XX
AC   AK136901;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 10)
XX
DE   Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
DE   library, clone:9330172P04 product:hypothetical Leucine-rich
DE   repeat/Leucine-rich region profile containing protein, full insert
DE   sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-1628
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 27d62dcaa9a4133968bf32262710391b.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=9330172P04
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1628
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="9330172P04"
FT                   /tissue_type="diencephalon"
FT                   /db_xref="taxon:10090"
FT   CDS_pept        419..1198
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="hypothetical Leucine-rich repeat/Leucine-rich region
FT                   profile containing protein (InterPro|IPR001611
FT                   PROSITE|PS50319, evidence: InterPro)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8R2R5"
FT                   /db_xref="InterPro:IPR001611"
FT                   /db_xref="InterPro:IPR032675"
FT                   /db_xref="MGI:MGI:2652848"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8R2R5"
FT                   /protein_id="BAE23163.1"
FT                   /translation="MEPPGEKPGEAEALSITPQLLKSHSGEFALDSILLLKLRGLGVVD
FT                   LGCLGECLNLEWLDLSGNALTHLGPLASLRQLAVLNVSNNRLTGLEPLAACENLQSLNA
FT                   AGNLLTTPGQLQCLAGLQALEHLRLRDPLARLSNPLCANASYWAVVQELLPGLKVIDGE
FT                   RVSGRGSELYQLCRDLDSSLRSGSSPGPRAIEAQPWVEPGYWESWPIRSSSILEEACRQ
FT                   FQDTLQECLDLDRQASDSLAQAQQALSPAETTSSFVF"
XX
SQ   Sequence 1628 BP; 306 A; 500 C; 431 G; 391 T; 0 other;
     ggtcggctgg gcctgcgcca gaaaccgagt tgcgtgttct gtttgtttgg gggatgctgg        60
     attcttctgg aaccgcccgc ggttagtggc cacgccctca gccccaggca ctgctctgag       120
     tgcagttaac agacagaacg ctttaaccgg taacaatcgc ggccggtgag ttatcacggg       180
     gcctgtccca tctctgtccg ctccatgttg tcagccgtat ctaggcagcc accctctact       240
     cctagagctc atcattcctg aagatctgtt ccaaaagaac ttcacactca gttgatgtgc       300
     acagaccttt ggcccaagca gaattgaggg agaggagcca gctgatcctc agaggcacct       360
     gcatccctgt gactgacagc actgccaggg cccagcggtc tgaactgtct tcagtatcat       420
     ggagcctcct ggagagaagc caggagaggc tgaggcgctg agcatcacac cccagctgct       480
     gaagtcccac tcaggagaat ttgccctgga ttccatcctg ttgctgaagc ttcggggttt       540
     aggggtggtg gacctgggtt gtttggggga gtgcctgaac cttgagtggc ttgacctatc       600
     aggcaatgca cttacccacc tgggcccact ggcatccctg cgccagctgg ctgtgctcaa       660
     cgtctccaat aatcggctta cagggctgga gccactagca gcttgtgaga acctgcagag       720
     cctcaatgct gctggtaacc tgctgaccac tcctggtcag ctgcagtgtc tggctgggtt       780
     gcaggccctg gagcacctga ggctccggga ccctttggcc cggctcagca acccgctctg       840
     tgcaaatgct tcctactggg ctgtggtcca agagctactg cctggcctca aagtcataga       900
     tggggaacga gtgagtgggc ggggcagtga gctgtaccag ttatgccggg acctggacag       960
     ttccttgcgc tccggctcca gcccagggcc cagagccatc gaggcccagc catgggtaga      1020
     gcccggctac tgggagtcct ggcccatccg gagcagctcc attctggagg aggcctgccg      1080
     acagttccag gacacactgc aggaatgcct tgacctggat cgtcaggcca gcgatagctt      1140
     ggcccaggcc cagcaggctc tcagccctgc agaaaccacc tcttcctttg tcttctgaat      1200
     gcaactcata gccaaggtgg tctgagtcgt agacattcct tccctgcccc atgcgcttgc      1260
     ctctctctct ctctctctct ctctctctct ttctctctct ctctctctct ctctctctgt      1320
     ctatttatat ctggtcactg accctgctta ctaggttgtt cattcatccg tttcttgaga      1380
     gctcctaact cctgcatctc ctcaagggtg tttcctccct cctcccacag cctcaaggac      1440
     acactttcca gatcgcctct agaagggaga ggagatcccg tcactatctg gcaaatgcac      1500
     catgcggcca ggctgcaggg gctctgggca tgctgtgcct gagctccctc aaatgcccaa      1560
     cctaaggctt tgtgggtaag attacttgcc acctgcttac tcttatgaaa tagtccagtg      1620
     ctcatatc                                                               1628
//

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