(data stored in ACNUC23583 zone)

EMBL: AK143222

ID   AK143222; SV 1; linear; mRNA; HTC; MUS; 2907 BP.
XX
AC   AK143222;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
DE   library, clone:E130315G12 product:hypothetical Leucine-rich
DE   repeat/Leucine-rich region profile containing protein, full insert
DE   sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-2907
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; aafcce5169d6dc3bfc7a55a3b06d39fd.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=E130315G12
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2907
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /dev_stage="0 day neonate"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="E130315G12"
FT                   /tissue_type="eyeball"
FT                   /db_xref="taxon:10090"
FT   CDS_pept        436..1215
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="hypothetical Leucine-rich repeat/Leucine-rich region
FT                   profile containing protein (InterPro|IPR001611
FT                   PROSITE|PS50319, evidence: InterPro)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8R2R5"
FT                   /db_xref="InterPro:IPR001611"
FT                   /db_xref="InterPro:IPR032675"
FT                   /db_xref="MGI:MGI:2652848"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8R2R5"
FT                   /protein_id="BAE25315.1"
FT                   /translation="MEPPGEKPGEAEALSITPQLLKSHSGEFALDSILLLKLRGLGVVD
FT                   LGCLGECLNLEWLDLSGNALTHLGPLASLRQLAVLNVSNNRLTGLEPLAACENLQSLNA
FT                   AGNLLTTPGQLQCLAGLQALEHLRLRDPLARLSNPLCANASYWAVVQELLPGLKVIDGE
FT                   RVSGRGSELYQLCRDLDSSLRSGSSPGPRAIEAQPWVEPGYWESWPIRSSSILEEACRQ
FT                   FQDTLQECLDLDRQASDSLAQAQQALSPAETTSSFVF"
FT   regulatory      2894..2899
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      2907
FT                   /note="putative"
XX
SQ   Sequence 2907 BP; 580 A; 834 C; 753 G; 740 T; 0 other;
     gcttttcgca ggttccgggt cggctgggcc tgcgccagaa accgagttgc gtgttctgtt        60
     tgtttggggg atgctggatt cttctggaac cgcccgcggt tagtggccac gccctcagcc       120
     ccaggcactg ctctgagtgc agttaacaga cagaacgctt taaccggtaa caatcgcggc       180
     cggtgagtta tcacggggcc tgtcccatct ctgtccgctc catgttgtca gccgtatcta       240
     ggcagccacc ctctactcct agagctcatc attcctgaag atctgttcca aaagaacttc       300
     acactcagtt gatgtgcaca gacctttggc ccaagcagaa ttgagggaga ggagccagct       360
     gatcctcaga ggcacctgca tccctgtgac tgacagcact gccagggccc agcggtctga       420
     actgtcttca gtatcatgga gcctcctgga gagaagccag gagaggctga ggcgctgagc       480
     atcacacccc agctgctgaa gtcccactca ggagaatttg ccctggattc catcctgttg       540
     ctgaagcttc ggggtttagg ggtggtggac ctgggttgtt tgggggagtg cctgaacctt       600
     gagtggcttg acctatcagg caatgcactt acccacctgg gcccactggc atccctgcgc       660
     cagctggctg tgctcaacgt ctccaataat cggcttacag ggctggagcc actagcagct       720
     tgtgagaacc tgcagagcct caatgctgct ggtaacctgc tgaccactcc tggtcagctg       780
     cagtgtctgg ctgggttgca ggccctggag cacctgaggc tccgggaccc tttggcccgg       840
     ctcagcaacc cgctctgtgc aaatgcttcc tactgggctg tggtccaaga gctactgcct       900
     ggcctcaaag tcatagatgg ggaacgagtg agtgggcggg gcagtgagct gtaccagtta       960
     tgccgggacc tggacagttc cttgcgctcc ggctccagcc cagggcccag agccatcgag      1020
     gcccagccat gggtagagcc cggctactgg gagtcctggc ccatccggag cagctccatt      1080
     ctggaggagg cctgccgaca gttccaggac acactgcagg aatgccttga cctggatcgt      1140
     caggccagcg atagcttggc ccaggcccag caggctctca gccctgcaga aaccacctct      1200
     tcctttgtct tctgaatgca actcatagcc aaggtggtct gatcgtagac attccttccc      1260
     tgccccatgc gcttgcctct ctctctctct ctctctctct ctctctctct ctctctctct      1320
     ctctctctct ttctctctct ctctctctct ctctctctgt ctatttatat ctggtcactg      1380
     accctgctta ctaggttgtt cattcatccg tttcttgaga gctcctaact cctgcatctc      1440
     ctcaagggtg tttcctccct cctcccacag cctcaaggac acactttcca gatcgcctct      1500
     agaagggaga ggagatcccg tcactatctg gcaaatgcac catgcggcca ggctgcaggg      1560
     gctctgggca tgctgtgcct gagctccctc aaatgcccaa cctaaggctt tgtgggtaag      1620
     attacttgcc acctgcttac tcttatgaaa tagtccagtg ctcatattat cacttgtctc      1680
     gtctccagca aatacgaggg ggcttctgaa cctctgcttt ggtcctgtgg aaggctccta      1740
     cacttgccct acctgctgct tcctggtact aggcaggaag tgtggacaca cacacacaca      1800
     cacacacaca cacacacaca cacacacaga gtctttttga gcttccctta tatgtacagg      1860
     ttgagctgag ggagaacaac acaaggttgg aaaggaacag actcagcaat tttattagcc      1920
     tggagttgaa agtctctggg agacgatatg ctcctgctgg gtgctgccac agctgtacag      1980
     ggagtaaggt gaagtcctag agaagaaggg aaaaccaggt tgggggtgcg ggagactgtt      2040
     tgggtcagat tctagctttt gtcacgtttc acaagtcctt tctcaaccca actttccatg      2100
     ccaagggctg gctctcccca ttaaccactt acctgtctag ggcttatttg gttctcaggg      2160
     ccctggagaa ggcaaactgt ccaggtagga agtagccgtg ggggtcttcg ccagcctgtg      2220
     ctatcttaat gcattgcaac tcctgaggat cctgctagaa ccagtgtttg ctgcagcagt      2280
     tctaggaagg gaggcaccgc cacaaccccc aggggaatgt cccgaggtgg gggtgggggg      2340
     acccagctct tcttttcagg tttcctgttc ttctcccata gacccagatt tgatctgtcc      2400
     ctccaggctt ctccctaacc tcgtttcctt cttacctgag gcccttgctt cagaattggg      2460
     cagtggacta tccggcctag aattttaccc ttggggtcca ttttaatgca ggccaggcat      2520
     ttccgccttc tctggggagg agaacaggga tgtcagagtg gagactagcc tctggcatgc      2580
     tctggagtgg gcgatgtagt gatttgaata agaatgtccc ccataggctg acatatttga      2640
     agatttggtc tccagttggt agtgctgttt ggggaggttt tgaaggtttg accttgatgg      2700
     aggaagtacg tcagtggggc aggctttaag attttaaaac ctcgaaccac tcccaattca      2760
     ctctttctgc gttctgttta cgaggaaggc tgtgagctct cagcttcctg ctctggccac      2820
     catgcctgct ggcatccaca tctccctgcc tcccaccatg atggactttt attcctctgg      2880
     aaccctaagc caaaataaac ctttcct                                          2907
//

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