(data stored in ACNUC23583 zone)

EMBL: AK171463

ID   AK171463; SV 1; linear; mRNA; HTC; MUS; 2682 BP.
XX
AC   AK171463;
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 10)
XX
DE   Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length
DE   enriched library, clone:F730217A08 product:hypothetical Leucine-rich
DE   repeat/Leucine-rich region profile containing protein, full insert
DE   sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-2682
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (14-APR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 6c6eaa8ff2bc9b57a553df29f2b5f2f9.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
CC   Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
CC   Trust/MRC building Addenbrookes Hospital Cambridge) whose
CC   assistance we gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=F730217A08
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2682
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="F730217A08"
FT                   /cell_type="B6-derived CD11 +ve dendritic cells"
FT                   /db_xref="taxon:10090"
FT   CDS_pept        199..978
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="hypothetical Leucine-rich repeat/Leucine-rich region
FT                   profile containing protein (InterPro|IPR001611
FT                   PROSITE|PS50319, evidence: InterPro)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8R2R5"
FT                   /db_xref="InterPro:IPR001611"
FT                   /db_xref="InterPro:IPR032675"
FT                   /db_xref="MGI:MGI:2652848"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8R2R5"
FT                   /protein_id="BAE42469.1"
FT                   /translation="MEPPGEKPGEAEALSITPQLLKSHSGEFALDSILLLKLRGLGVVD
FT                   LVCLGECLNLEWLDLSGNALTHLGPLASLRQLAVLNVSNNRLTGLEPLAACENLQSLNA
FT                   AGNLLTTPGQLQCLAGLQALEHLRLRDPLARLSNPLCANASYWAVVQELLPGLKVIDGE
FT                   RVSGRGSELYQLCRDLDSSLRSGSSPGPRAIEAQPWVEPGYWESWPIRSSSILEEACRQ
FT                   FQDTLQECLDLDRQASDSLAQAQQALSPAETTSSFVF"
FT   regulatory      2663..2668
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      2682
FT                   /note="putative"
XX
SQ   Sequence 2682 BP; 531 A; 765 C; 700 G; 686 T; 0 other;
     gaggttccgg gtcggctggg cctgcgccag aaaccgagtt gcgtgttctg tttgtttggg        60
     ggatgctgga ttcttctgga accgcccgcg ggcccaagca gaattgaggg agaggagcca       120
     gctgatcctc agaggcacct gcatccctgt gactgacagc actgccaggg cccagcggtc       180
     tgaactgtct tcagtatcat ggagcctcct ggagagaagc caggagaggc tgaggcgctg       240
     agcatcacac cccagctgct gaagtcccac tcaggagaat ttgccctgga ttccatcctg       300
     ttgctgaagc ttcggggttt aggggtggtg gacctggttt gtttggggga gtgcctgaac       360
     cttgagtggc ttgacctatc aggcaatgca cttacccacc tgggcccact ggcatccctg       420
     cgccagctgg ctgtgctcaa cgtctccaat aatcggctta cagggctgga gccactagca       480
     gcttgtgaga acctgcagag cctcaatgct gctggtaacc tgctgaccac tcctggtcag       540
     ctgcagtgtc tggctgggtt gcaggccctg gagcacctga ggctccggga ccctttggcc       600
     cggctcagca acccgctctg tgcaaatgct tcctactggg ctgtggtcca agagctactg       660
     cctggcctca aagtcataga tggggaacga gtgagtgggc ggggcagtga gctgtaccag       720
     ttatgccggg acctggacag ttccttgcgc tccggctcca gcccagggcc cagagccatc       780
     gaggcccagc catgggtaga gcccggctac tgggagtcct ggcccatccg gagcagctcc       840
     attctggagg aggcctgccg acagttccag gacacactgc aggaatgcct tgacctggat       900
     cgtcaggcca gcgatagctt ggcccaggcc cagcaggctc tcagccctgc agaaaccacc       960
     tcttcctttg tcttctgaat gcaactcata gccaaggtgg tctgatcgta gacattcctt      1020
     ccctgcccca tgcgcttgcc tctctctctc tctctctctc tctctctctc tctctctctc      1080
     tctctctctc tctctttctc tctctctctc tctctctctc tctgtctatt tatatctggt      1140
     cactgaccct gcttactagg ttgttcattc atccgtttct tgagagctcc taactcctgc      1200
     atctcctcaa gggtgtttcc tccctcctcc cacagcctca aggacacact ttccagatcg      1260
     cctctagaag ggagaggaga tcccgtcact atctggcaaa tgcaccatgc ggccaggctg      1320
     caggggctct gggcatgctg tgcctgagct ccctcaaatg cccaacctaa ggctttgtgg      1380
     gtaagattac ttggccacct gcttactctt atgaaatagt ccagtgctca tattatcact      1440
     tgtctcgtct ccagcaaata cgagggggct tctgaacctc tgctttggtc ctgtggaagg      1500
     ctcctacact tgccctacct gctgcttcct ggtactaggc aggaagtgtg gacacacacc      1560
     acacacacac acacacacac acacacacac acacagagtc tttttgagct tcccttatat      1620
     gtacaggttg agctgaggga gaacaacaca aggttggaaa ggaacagact cagcaatttt      1680
     attaccctgg agttgaaagt ctctgggaga cgatatgctc ctgctgggtg ctgccacagc      1740
     tgtacaggga gtaaggtgaa gtcctacaga agaagggaaa acccaggttg ggggtgcggg      1800
     agactgtttg ggtcagattc tagcttttgt cacgtttcac aagtcctttc tcaacccaat      1860
     ttccatgcca agggctggct ctccccatta accacttacc tgtctagggc ttatttggtt      1920
     ctcagggccc tggagaaggc aaactgtcca ggtaggaagt agccgctggg ggtcttcgcc      1980
     agccctgtgc tatcttaatg cattgcaact cctgaggatc ctgctagaac cagtgtttgc      2040
     tgcagcagtt ctaggaaggg aggcaccgcc acaaccccca ggggaatgtc ccgaggtggg      2100
     ggtgggggga cccagctctt cttttcaggt ttcctgttct tctcccatag acccagattt      2160
     gatctgtccc tccaggcttc tccctaacct cgtttccttc ttacctgagg cccttgcttc      2220
     agaattgggc agtggactat ccggcctaga attttaccct tggggtccat tttaatgcag      2280
     gccaggcatt tccgccttct ctggggagga gaacagggat gtcagagtgg agactagcct      2340
     ctggcatgct ctggagtggg cgatgtagtg atttgaataa gaatgtcccc cataggctga      2400
     catatttgaa gatttggtct ccagttggta gtgctgtttg gggaggtttt gaaggtttga      2460
     ccttgatgga ggaagtacgt cagtggggca ggctttaaga ttttaaaacc tcgaaccact      2520
     cccaattcac tctttctgcg ttctgtttac gaggaaggct gtgagctctc agcttcctgc      2580
     tctggccacc atgcctgctg gcatccacat ctccctgcct cccaccatga tggactttta      2640
     ttcctctgga accctaagcc aaaataaacc tttcctatta tt                         2682
//

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