(data stored in SCRATCH zone)

SWISSPROT: B2JLJ8_PARP8

ID   B2JLJ8_PARP8            Unreviewed;       776 AA.
AC   B2JLJ8;
DT   10-JUN-2008, integrated into UniProtKB/TrEMBL.
DT   10-JUN-2008, sequence version 1.
DT   08-MAY-2019, entry version 60.
DE   RecName: Full=LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00073013};
DE   Flags: Precursor;
GN   Name=lptD {ECO:0000256|HAMAP-Rule:MF_01411};
GN   OrderedLocusNames=Bphy_3482 {ECO:0000313|EMBL:ACC72631.1};
OS   Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 /
OS   STM815) (Burkholderia phymatum).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=391038 {ECO:0000313|EMBL:ACC72631.1, ECO:0000313|Proteomes:UP000001192};
RN   [1] {ECO:0000313|Proteomes:UP000001192}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 17167 / CIP 108236 / LMG 21445 / STM815
RC   {ECO:0000313|Proteomes:UP000001192};
RX   PubMed=25197461; DOI=10.4056/sigs.4861021;
RA   Moulin L., Klonowska A., Caroline B., Booth K., Vriezen J.A.,
RA   Melkonian R., James E.K., Young J.P., Bena G., Hauser L., Land M.,
RA   Kyrpides N., Bruce D., Chain P., Copeland A., Pitluck S., Woyke T.,
RA   Lizotte-Waniewski M., Bristow J., Riley M.;
RT   "Complete genome sequence of Burkholderia phymatum STM815(T), a broad
RT   host range and efficient nitrogen-fixing symbiont of Mimosa species.";
RL   Stand. Genomic Sci. 9:763-774(2014).
CC   -!- FUNCTION: Together with LptE, is involved in the assembly of
CC       lipopolysaccharide (LPS) at the surface of the outer membrane.
CC       {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00542435}.
CC   -!- SUBUNIT: Component of the lipopolysaccharide transport and
CC       assembly complex. Interacts with LptE and LptA.
CC       {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00542429}.
CC   -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000256|HAMAP-
CC       Rule:MF_01411}.
CC   -!- SIMILARITY: Belongs to the LptD family. {ECO:0000256|HAMAP-
CC       Rule:MF_01411, ECO:0000256|SAAS:SAAS00542431}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation
CC       of feature annotation. {ECO:0000256|HAMAP-Rule:MF_01411}.
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DR   EMBL; CP001044; ACC72631.1; -; Genomic_DNA.
DR   STRING; 391038.Bphy_3482; -.
DR   EnsemblBacteria; ACC72631; ACC72631; Bphy_3482.
DR   KEGG; bph:Bphy_3482; -.
DR   eggNOG; ENOG4105E7H; Bacteria.
DR   eggNOG; COG1452; LUCA.
DR   HOGENOM; HOG000220687; -.
DR   OMA; TYMLEFE; -.
DR   BioCyc; BPHY391038:G1GBS-3580-MONOMER; -.
DR   Proteomes; UP000001192; Chromosome 2.
DR   GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR   GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR   GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR   HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR   InterPro; IPR020889; LipoPS_assembly_LptD.
DR   InterPro; IPR007543; LptD_C.
DR   Pfam; PF04453; LptD; 1.
PE   3: Inferred from homology;
DR   PRODOM; B2JLJ8.
DR   SWISS-2DPAGE; B2JLJ8.
KW   Cell outer membrane {ECO:0000256|HAMAP-Rule:MF_01411};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001192};
KW   Membrane {ECO:0000256|HAMAP-Rule:MF_01411};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001192};
KW   Signal {ECO:0000256|HAMAP-Rule:MF_01411}.
FT   SIGNAL        1     30       {ECO:0000256|HAMAP-Rule:MF_01411}.
FT   CHAIN        31    776       LPS-assembly protein LptD.
FT                                {ECO:0000256|HAMAP-Rule:MF_01411}.
FT                                /FTId=PRO_5009007547.
FT   DOMAIN      307    679       LptD. {ECO:0000259|Pfam:PF04453}.
SQ   SEQUENCE   776 AA;  85549 MW;  6E077115BBBC865F CRC64;
     MIFRREVQGL AIRPIAALVL CLLAPVAVHA QLVGDAASAE RLSDAWSLRF APQLTETPSV
     PGVKAATIGL GDAVTGTVDS DVSLKGAAEL RRYGFVVKGD ALHYDVDGDM ADAYGHVSIV
     SKGDVFTGPF GQLHVDASEG IIAQPRYRFY LNGGWGSGRR AELLDNERSK IEDGTYSTCD
     CDGNPAWYIR ASQFAMDRGA DEGVAHNGVL YFQNIPLLAS PWLSFPLDGA RRSGLLSPTW
     SMSSKNGVDI TVPYYFNVAP NYDLTIAPRY MSKRGEMLSA DYRYLTEASS GSLSIAYLPN
     DITTHERRYS IDLNHIWRLG SGFAAYVNYN RVSDANVSTD LGSGSAFPTS STTLYQQEAG
     LTYNNGPWSV LAREQHWQSF SSDTTYNREP QVNVRYNRYD VGGFDYGFEA DATRFTLASD
     DVTQGTRFVF NPFVSYPVVR PGWFFTPKIK WHFASYDLTS IASDAPTGQP HSVNVNVPTL
     SLDSGMTFER AVRLWGGSYI QTLEPRLHYV YTPYRNQTYV PLFDTTEADF GLGELFTDNA
     FVGNDRVSDE SRVTAALTSR LIDAATGDER ARFVIAQRYD FIQPRVTLYD TESTANVART
     SLIAGSSIKV GPDLILQNAL QYSQSDNYLT QGSIGFAWAP ATAHVVNVAY RYTRANTTLD
     FQPVNQIIVS GQWPLAKNMA SVARINYDMS THRLIAGLLG LQYDAQCWSL SLGMEKYTNA
     TGSTSPSTGT RMLMQLQLKG LSRTDRGLLD QFKADVPGYS STPADETPVS RFSEYQ
//

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