(data stored in SCRATCH zone)

SWISSPROT: B8I9M4_METNO

ID   B8I9M4_METNO            Unreviewed;       159 AA.
AC   B8I9M4;
DT   03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   03-MAR-2009, sequence version 1.
DT   07-JUN-2017, entry version 52.
DE   RecName: Full=Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};
GN   Name=ybeY {ECO:0000256|HAMAP-Rule:MF_00009};
GN   OrderedLocusNames=Mnod_0233 {ECO:0000313|EMBL:ACL55277.1};
OS   Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Methylobacteriaceae; Methylobacterium.
OX   NCBI_TaxID=460265 {ECO:0000313|EMBL:ACL55277.1, ECO:0000313|Proteomes:UP000008207};
RN   [1] {ECO:0000313|EMBL:ACL55277.1, ECO:0000313|Proteomes:UP000008207}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LMG 21967 / CNCM I-2342 / ORS 2060
RC   {ECO:0000313|Proteomes:UP000008207};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E.,
RA   Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T.,
RA   Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N.,
RA   Ivanova N., Marx C.J., Richardson P.;
RT   "Complete sequence of chromosome of Methylobacterium nodulans ORS
RT   2060.";
RL   Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Single strand-specific metallo-endoribonuclease involved
CC       in late-stage 70S ribosome quality control and in maturation of
CC       the 3' terminus of the 16S rRNA. {ECO:0000256|HAMAP-
CC       Rule:MF_00009}.
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000256|HAMAP-
CC         Rule:MF_00009};
CC       Note=Binds 1 zinc ion. {ECO:0000256|HAMAP-Rule:MF_00009};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009}.
CC   -!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
CC       {ECO:0000256|HAMAP-Rule:MF_00009}.
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DR   EMBL; CP001349; ACL55277.1; -; Genomic_DNA.
DR   RefSeq; WP_015926990.1; NC_011894.1.
DR   ProteinModelPortal; B8I9M4; -.
DR   STRING; 460265.Mnod_0233; -.
DR   EnsemblBacteria; ACL55277; ACL55277; Mnod_0233.
DR   KEGG; mno:Mnod_0233; -.
DR   eggNOG; ENOG4105KGE; Bacteria.
DR   eggNOG; COG0319; LUCA.
DR   HOGENOM; HOG000132869; -.
DR   KO; K07042; -.
DR   OMA; LGYDHMN; -.
DR   OrthoDB; POG091H029S; -.
DR   Proteomes; UP000008207; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP.
DR   Gene3D; 3.40.390.30; -; 1.
DR   HAMAP; MF_00009; Endoribonucl_YbeY; 1.
DR   InterPro; IPR023091; MetalPrtase_cat_dom_prd.
DR   InterPro; IPR002036; YbeY.
DR   Pfam; PF02130; UPF0054; 1.
DR   TIGRFAMs; TIGR00043; TIGR00043; 1.
PE   3: Inferred from homology;
DR   PRODOM; B8I9M4.
DR   SWISS-2DPAGE; B8I9M4.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008207};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Endonuclease {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Hydrolase {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Metal-binding {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Nuclease {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008207};
KW   Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00009};
KW   rRNA processing {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Zinc {ECO:0000256|HAMAP-Rule:MF_00009}.
FT   METAL       117    117       Zinc; catalytic. {ECO:0000256|HAMAP-Rule:
FT                                MF_00009}.
FT   METAL       121    121       Zinc; catalytic. {ECO:0000256|HAMAP-Rule:
FT                                MF_00009}.
FT   METAL       127    127       Zinc; catalytic. {ECO:0000256|HAMAP-Rule:
FT                                MF_00009}.
SQ   SEQUENCE   159 AA;  17014 MW;  DAD9A11B5270CC32 CRC64;
     MTNEIDVVVE DERWDRAVPD LGGFVRGAVE AALAVLPPGG PVEVSVVLTD DAAVQELNRT
     WRGKDKPTNV LSFPAGHPHG GDLRPLGDVV LAYDTMLRES GEQSKPLGHH LAHLLVHGTL
     HLLGQDHETG EAEAEAMEAL EVVALRRLGV PDPYGDAAE
//

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