(data stored in SCRATCH3701 zone)

SWISSPROT: GREB_VIBVY

ID   GREB_VIBVY              Reviewed;         160 AA.
AC   Q7MPX6;
DT   25-OCT-2004, integrated into UniProtKB/Swiss-Prot.
DT   25-OCT-2004, sequence version 2.
DT   11-DEC-2019, entry version 103.
DE   RecName: Full=Transcription elongation factor GreB {ECO:0000255|HAMAP-Rule:MF_00930};
DE   AltName: Full=Transcript cleavage factor GreB {ECO:0000255|HAMAP-Rule:MF_00930};
GN   Name=greB {ECO:0000255|HAMAP-Rule:MF_00930}; OrderedLocusNames=VV0235;
OS   Vibrio vulnificus (strain YJ016).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Vibrio.
OX   NCBI_TaxID=196600;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=YJ016;
RX   PubMed=14656965; DOI=10.1101/gr.1295503;
RA   Chen C.-Y., Wu K.-M., Chang Y.-C., Chang C.-H., Tsai H.-C., Liao T.-L.,
RA   Liu Y.-M., Chen H.-J., Shen A.B.-T., Li J.-C., Su T.-L., Shao C.-P.,
RA   Lee C.-T., Hor L.-I., Tsai S.-F.;
RT   "Comparative genome analysis of Vibrio vulnificus, a marine pathogen.";
RL   Genome Res. 13:2577-2587(2003).
CC   -!- FUNCTION: Necessary for efficient RNA polymerase transcription
CC       elongation past template-encoded arresting sites. The arresting sites
CC       in DNA have the property of trapping a certain fraction of elongating
CC       RNA polymerases that pass through, resulting in locked ternary
CC       complexes. Cleavage of the nascent transcript by cleavage factors such
CC       as GreA or GreB allows the resumption of elongation from the new
CC       3'terminus. GreB releases sequences of up to 9 nucleotides in length.
CC       {ECO:0000255|HAMAP-Rule:MF_00930}.
CC   -!- SIMILARITY: Belongs to the GreA/GreB family. GreB subfamily.
CC       {ECO:0000255|HAMAP-Rule:MF_00930}.
DR   EMBL; BA000037; BAC92999.1; -; Genomic_DNA.
DR   RefSeq; WP_011149222.1; NC_005139.1.
DR   SMR; Q7MPX6; -.
DR   STRING; 672.VV93_v1c02140; -.
DR   EnsemblBacteria; BAC92999; BAC92999; BAC92999.
DR   GeneID; 2623002; -.
DR   KEGG; vvy:VV0235; -.
DR   PATRIC; fig|196600.6.peg.272; -.
DR   HOGENOM; HOG000241145; -.
DR   KO; K04760; -.
DR   OMA; DQIFFGA; -.
DR   OrthoDB; 1591985at2; -.
DR   Proteomes; UP000002675; Chromosome I.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0070063; F:RNA polymerase binding; IEA:InterPro.
DR   GO; GO:0032784; P:regulation of DNA-templated transcription, elongation; IEA:UniProtKB-UniRule.
DR   Gene3D; 1.10.287.180; -; 1.
DR   Gene3D; 3.10.50.30; -; 1.
DR   HAMAP; MF_00105; GreA_GreB; 1.
DR   HAMAP; MF_00930; GreB; 1.
DR   InterPro; IPR036953; GreA/GreB_C_sf.
DR   InterPro; IPR018151; TF_GreA/GreB_CS.
DR   InterPro; IPR028624; Tscrpt_elong_fac_GreA/B.
DR   InterPro; IPR001437; Tscrpt_elong_fac_GreA/B_C.
DR   InterPro; IPR023459; Tscrpt_elong_fac_GreA/B_fam.
DR   InterPro; IPR022691; Tscrpt_elong_fac_GreA/B_N.
DR   InterPro; IPR036805; Tscrpt_elong_fac_GreA/B_N_sf.
DR   InterPro; IPR006358; Tscrpt_elong_fac_GreB.
DR   PANTHER; PTHR30437; PTHR30437; 1.
DR   Pfam; PF01272; GreA_GreB; 1.
DR   Pfam; PF03449; GreA_GreB_N; 1.
DR   PIRSF; PIRSF006092; GreA_GreB; 1.
DR   SUPFAM; SSF46557; SSF46557; 1.
DR   TIGRFAMs; TIGR01461; greB; 1.
DR   PROSITE; PS00829; GREAB_1; 1.
DR   PROSITE; PS00830; GREAB_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q7MPX6.
DR   SWISS-2DPAGE; Q7MPX6.
KW   DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT   CHAIN           1..160
FT                   /note="Transcription elongation factor GreB"
FT                   /id="PRO_0000176995"
SQ   SEQUENCE   160 AA;  18711 MW;  D4B0A0B7F47005FB CRC64;
     MKTKMITREG YNKLKQELDY LWKEHRPEIT QKVSWAASLG DRSENADYTY NKRLLRQIDR
     RVRFLSKFLP EVKIVDYAPQ QEGKVFFGAW VEIENEAGEV MKFRIVGPEE IYGDAKGYIS
     IDSPMARALL KKEVDDEVQV PTPSGIKEWF INSIEYDKGQ
//

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