(data stored in ACNUC7421 zone)

SWISSPROT: D4YWV8_SPHJU

ID   D4YWV8_SPHJU            Unreviewed;       198 AA.
AC   D4YWV8;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 38.
DE   RecName: Full=Ribosome hibernation promoting factor {ECO:0000256|HAMAP-Rule:MF_00839};
DE            Short=HPF {ECO:0000256|HAMAP-Rule:MF_00839};
GN   Name=rpoN {ECO:0000313|EMBL:BAI94840.1};
GN   Synonyms=hpf {ECO:0000256|HAMAP-Rule:MF_00839};
GN   OrderedLocusNames=SJA_C1-00060 {ECO:0000313|EMBL:BAI94840.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI94840.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI94840.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: Required for dimerization of active 70S ribosomes into
CC       100S ribosomes in stationary phase; 100S ribosomes are
CC       translationally inactive and sometimes present during exponential
CC       growth. {ECO:0000256|HAMAP-Rule:MF_00839}.
CC   -!- SUBUNIT: Interacts with 100S ribosomes. {ECO:0000256|HAMAP-
CC       Rule:MF_00839}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00839}.
CC   -!- SIMILARITY: Belongs to the HPF/YfiA ribosome-associated protein
CC       family. Long HPF subfamily. {ECO:0000256|HAMAP-Rule:MF_00839}.
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DR   EMBL; AP010803; BAI94840.1; -; Genomic_DNA.
DR   RefSeq; WP_013038689.1; NC_014006.1.
DR   ProteinModelPortal; D4YWV8; -.
DR   STRING; 452662.SJA_C1-00060; -.
DR   EnsemblBacteria; BAI94840; BAI94840; SJA_C1-00060.
DR   GeneID; 29271716; -.
DR   KEGG; sjp:SJA_C1-00060; -.
DR   eggNOG; ENOG4107TNS; Bacteria.
DR   eggNOG; COG1544; LUCA.
DR   HOGENOM; HOG000074926; -.
DR   OMA; RRLKDHH; -.
DR   OrthoDB; POG091H00J6; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0044238; P:primary metabolic process; IEA:InterPro.
DR   GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-HAMAP.
DR   CDD; cd00552; RaiA; 1.
DR   Gene3D; 3.30.160.100; -; 1.
DR   HAMAP; MF_00839; HPF; 1.
DR   InterPro; IPR034694; HPF_long/plastid.
DR   InterPro; IPR032528; Ribosom_S30AE_C.
DR   InterPro; IPR003489; Ribosomal_S30Ae/sigma54_mod.
DR   Pfam; PF16321; Ribosom_S30AE_C; 1.
DR   Pfam; PF02482; Ribosomal_S30AE; 1.
DR   SUPFAM; SSF69754; SSF69754; 1.
DR   TIGRFAMs; TIGR00741; yfiA; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YWV8.
DR   SWISS-2DPAGE; D4YWV8.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00839};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Translation regulation {ECO:0000256|HAMAP-Rule:MF_00839}.
FT   DOMAIN      137    191       Ribosom_S30AE_C. {ECO:0000259|Pfam:
FT                                PF16321}.
FT   COILED       81    108       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   198 AA;  21726 MW;  8FDBD574910CF8A6 CRC64;
     MDIRVSGHQV DTGDALKQHV WTRLEAMAEK YFSRALSAQV TFRPAPHGAF HCDIVCHVMT
     GLILKGAGEA QEAHPAFDQA AERIEKQLRR YLRRLKDRSA QAAAAEANRA NGFSVEELDG
     AGYTIFASPA DEEEPAEAPL IVAETKVDIP EASVSDAVMM LDLRNTNALL FVNAGTAAYN
     MVYRRQDGTI GWVEPRLA
//

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