(data stored in ACNUC7421 zone)

SWISSPROT: D4YY20_SPHJU

ID   D4YY20_SPHJU            Unreviewed;       463 AA.
AC   D4YY20;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 51.
DE   SubName: Full=Putative integrase {ECO:0000313|EMBL:BAI95252.1};
GN   OrderedLocusNames=SJA_C1-04180 {ECO:0000313|EMBL:BAI95252.1},
GN   SJA_C1-29940 {ECO:0000313|EMBL:BAI97828.1}, SJA_P1-02180
GN   {ECO:0000313|EMBL:BAI99170.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OG   Plasmid pCHQ1 {ECO:0000313|EMBL:BAI99170.1,
OG   ECO:0000313|Proteomes:UP000007753}.
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95252.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95252.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753}, and
RC   UT26S {ECO:0000313|EMBL:BAI95252.1};
RC   PLASMID=pCHQ1 {ECO:0000313|EMBL:BAI99170.1}, and Plasmid pCHQ1
RC   {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|SAAS:SAAS00059951}.
CC   -!- SIMILARITY: Belongs to the 'phage' integrase family.
CC       {ECO:0000256|SAAS:SAAS00555423}.
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DR   EMBL; AP010803; BAI95252.1; -; Genomic_DNA.
DR   EMBL; AP010803; BAI97828.1; -; Genomic_DNA.
DR   EMBL; AP010805; BAI99170.1; -; Genomic_DNA.
DR   RefSeq; WP_013039032.1; NC_014007.1.
DR   ProteinModelPortal; D4YY20; -.
DR   STRING; 452662.SJA_C1-29940; -.
DR   EnsemblBacteria; BAI95252; BAI95252; SJA_C1-04180.
DR   EnsemblBacteria; BAI97828; BAI97828; SJA_C1-29940.
DR   EnsemblBacteria; BAI99170; BAI99170; SJA_P1-02180.
DR   GeneID; 29275767; -.
DR   KEGG; sjp:SJA_C1-04180; -.
DR   KEGG; sjp:SJA_C1-29940; -.
DR   KEGG; sjp:SJA_P1-02180; -.
DR   eggNOG; ENOG4107W5U; Bacteria.
DR   eggNOG; ENOG410Y0AP; LUCA.
DR   HOGENOM; HOG000269302; -.
DR   OMA; WLTEVGQ; -.
DR   OrthoDB; POG091H0DCY; -.
DR   BioCyc; SJAP452662:GHEL-429-MONOMER; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   Proteomes; UP000007753; Plasmid pCHQ1.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   Gene3D; 1.10.150.130; -; 1.
DR   Gene3D; 1.10.443.10; -; 1.
DR   InterPro; IPR011010; DNA_brk_join_enz.
DR   InterPro; IPR013762; Integrase-like_cat.
DR   InterPro; IPR002104; Integrase_catalytic.
DR   InterPro; IPR010998; Integrase_Lambda-type_N.
DR   InterPro; IPR023109; Integrase_recombinase_N.
DR   InterPro; IPR004107; Integrase_SAM-like_N.
DR   Pfam; PF02899; Phage_int_SAM_1; 1.
DR   Pfam; PF00589; Phage_integrase; 1.
DR   SUPFAM; SSF47823; SSF47823; 1.
DR   SUPFAM; SSF56349; SSF56349; 2.
PE   3: Inferred from homology;
DR   PRODOM; D4YY20.
DR   SWISS-2DPAGE; D4YY20.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Cytoplasm {ECO:0000256|SAAS:SAAS00059963};
KW   DNA integration {ECO:0000256|SAAS:SAAS00059953};
KW   DNA recombination {ECO:0000256|SAAS:SAAS00446784};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00059961};
KW   Plasmid {ECO:0000313|EMBL:BAI99170.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753}.
FT   DOMAIN       37    124       Integrase_SAM-like_N. {ECO:0000259|Pfam:
FT                                PF02899}.
FT   DOMAIN      197    389       Phage_integrase. {ECO:0000259|Pfam:
FT                                PF00589}.
SQ   SEQUENCE   463 AA;  51875 MW;  24F0E84F895C6E25 CRC64;
     MDNSGASIVI QERRTADGLD SYIPVILRDG AIYDLHLERY FLDLPLNGSR SRHSLRAHGY
     DVLVWVRFLA SARGKSVWQA DADDVGAYHR ARRRSDAEFR ISASTWNRAI ASLDKLYRWA
     EREGLIERTP FTHRQVWRRS HDGRRAAVTG RNNAYERAAR RSDVRFIDLT DYRAFREVGL
     RGLTVEGTER PGARDRNGAR NALFADLLVT TGLRLEEASH LLAAEIPVCD ARSERQRRVE
     LPAALTKGDR GRSMLLPRRL LPVFDAYIAV ERAAAVAKFA QRRGWEAIDR PIFIHSPSFG
     QRALHLVGGG TMDIEVVTPD ERARLVICAD DGTPREAAVL WLTEVGHPVL PNSWEAIFAR
     ASRRCTDAGI PVRLSPHQLR HSFAVHMLAM LIQRRLADAA APVGAMEGYR QLVGDPLQQV
     QRLLGHSSLA TTSIYLDHLA TRADTVDAAV EELLALVPGY LRS
//

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