(data stored in ACNUC7421 zone)

SWISSPROT: D4YYI3_SPHJU

ID   D4YYI3_SPHJU            Unreviewed;       122 AA.
AC   D4YYI3;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 42.
DE   RecName: Full=30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315};
GN   Name=rpsM {ECO:0000256|HAMAP-Rule:MF_01315,
GN   ECO:0000313|EMBL:BAI95415.1};
GN   OrderedLocusNames=SJA_C1-05810 {ECO:0000313|EMBL:BAI95415.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95415.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95415.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: Located at the top of the head of the 30S subunit, it
CC       contacts several helices of the 16S rRNA. In the 70S ribosome it
CC       contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S
CC       subunit (bridge B1b), connecting the 2 subunits; these bridges are
CC       implicated in subunit movement. Contacts the tRNAs in the A and P-
CC       sites. {ECO:0000256|HAMAP-Rule:MF_01315}.
CC   -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose
CC       heterodimer with protein S19. Forms two bridges to the 50S subunit
CC       in the 70S ribosome. {ECO:0000256|HAMAP-Rule:MF_01315}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uS13
CC       family. {ECO:0000256|HAMAP-Rule:MF_01315,
CC       ECO:0000256|RuleBase:RU003830}.
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DR   EMBL; AP010803; BAI95415.1; -; Genomic_DNA.
DR   RefSeq; WP_007686665.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-05810; -.
DR   EnsemblBacteria; BAI95415; BAI95415; SJA_C1-05810.
DR   GeneID; 29272256; -.
DR   KEGG; sjp:SJA_C1-05810; -.
DR   eggNOG; ENOG4108Z04; Bacteria.
DR   eggNOG; COG0099; LUCA.
DR   HOGENOM; HOG000039879; -.
DR   KO; K02952; -.
DR   OMA; RTKNNSR; -.
DR   OrthoDB; POG091H00SC; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP.
DR   Gene3D; 4.10.910.10; -; 2.
DR   HAMAP; MF_01315; Ribosomal_S13_S18; 1.
DR   InterPro; IPR027437; 30s_Rbsml_prot_S13_C.
DR   InterPro; IPR001892; Ribosomal_S13.
DR   InterPro; IPR010979; Ribosomal_S13-like_H2TH.
DR   InterPro; IPR019980; Ribosomal_S13_bac-type.
DR   InterPro; IPR018269; Ribosomal_S13_CS.
DR   PANTHER; PTHR10871:SF11; PTHR10871:SF11; 1.
DR   Pfam; PF00416; Ribosomal_S13; 1.
DR   PIRSF; PIRSF002134; Ribosomal_S13; 1.
DR   SUPFAM; SSF46946; SSF46946; 1.
DR   TIGRFAMs; TIGR03631; uS13_bact; 1.
DR   PROSITE; PS00646; RIBOSOMAL_S13_1; 1.
DR   PROSITE; PS50159; RIBOSOMAL_S13_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YYI3.
DR   SWISS-2DPAGE; D4YYI3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01315,
KW   ECO:0000256|RuleBase:RU003830};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01315,
KW   ECO:0000256|RuleBase:RU003830, ECO:0000313|EMBL:BAI95415.1};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01315};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01315};
KW   tRNA-binding {ECO:0000256|HAMAP-Rule:MF_01315}.
SQ   SEQUENCE   122 AA;  13674 MW;  33B99ECA9E930FF2 CRC64;
     MARIAGVNIP TNKRVIIALT YIHGIGRKTA VDIADKLGID HSRRVQDLSD AEVLQIRETI
     DADLTVEGDL RRETAMNIKR LMDLACYRGL RHRKGLPVRG QRTHTNARTR KGKAKPIAGK
     KK
//

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