(data stored in ACNUC7421 zone)

SWISSPROT: D4YYM4_SPHJU

ID   D4YYM4_SPHJU            Unreviewed;       123 AA.
AC   D4YYM4;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 43.
DE   RecName: Full=30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623};
GN   Name=rpsL {ECO:0000256|HAMAP-Rule:MF_00403,
GN   ECO:0000313|EMBL:BAI95456.1};
GN   OrderedLocusNames=SJA_C1-06220 {ECO:0000313|EMBL:BAI95456.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95456.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95456.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: Interacts with and stabilizes bases of the 16S rRNA that
CC       are involved in tRNA selection in the A site and with the mRNA
CC       backbone. Located at the interface of the 30S and 50S subunits, it
CC       traverses the body of the 30S subunit contacting proteins on the
CC       other side and probably holding the rRNA structure together. The
CC       combined cluster of proteins S8, S12 and S17 appears to hold
CC       together the shoulder and platform of the 30S subunit.
CC       {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}.
CC   -!- FUNCTION: With S4 and S5 plays an important role in translational
CC       accuracy. {ECO:0000256|HAMAP-Rule:MF_00403,
CC       ECO:0000256|RuleBase:RU003623}.
CC   -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S8
CC       and S17. May interact with IF1 in the 30S initiation complex.
CC       {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uS12
CC       family. {ECO:0000256|HAMAP-Rule:MF_00403,
CC       ECO:0000256|RuleBase:RU003622}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; AP010803; BAI95456.1; -; Genomic_DNA.
DR   RefSeq; WP_007686591.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-06220; -.
DR   EnsemblBacteria; BAI95456; BAI95456; SJA_C1-06220.
DR   GeneID; 29272295; -.
DR   KEGG; sjp:SJA_C1-06220; -.
DR   eggNOG; ENOG4108UKE; Bacteria.
DR   eggNOG; COG0048; LUCA.
DR   HOGENOM; HOG000040063; -.
DR   KO; K02950; -.
DR   OMA; KRGVCTA; -.
DR   OrthoDB; POG091H025P; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP.
DR   CDD; cd03368; Ribosomal_S12; 1.
DR   HAMAP; MF_00403_B; Ribosomal_S12_B; 1.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR006032; Ribosomal_S12/S23.
DR   InterPro; IPR005679; Ribosomal_S12_bac.
DR   PANTHER; PTHR11652; PTHR11652; 1.
DR   Pfam; PF00164; Ribosom_S12_S23; 1.
DR   PIRSF; PIRSF002133; Ribosomal_S12/S23; 1.
DR   PRINTS; PR01034; RIBOSOMALS12.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR00981; rpsL_bact; 1.
DR   PROSITE; PS00055; RIBOSOMAL_S12; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YYM4.
DR   SWISS-2DPAGE; D4YYM4.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00403,
KW   ECO:0000256|RuleBase:RU003622};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00403,
KW   ECO:0000256|RuleBase:RU003622, ECO:0000313|EMBL:BAI95456.1};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_00403,
KW   ECO:0000256|RuleBase:RU003623};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00403,
KW   ECO:0000256|RuleBase:RU003623};
KW   tRNA-binding {ECO:0000256|HAMAP-Rule:MF_00403,
KW   ECO:0000256|RuleBase:RU003623}.
SQ   SEQUENCE   123 AA;  13948 MW;  F982C6AFEFDC85F7 CRC64;
     MPTINQLVRK GRELQKTKSK VPAMEANPQK RGVCTRVYTT TPKKPNSALR KVAKVRLVNQ
     REVITYIPGE GHNLQEHSVV LIRGGRVRDL PGVRYHVLRG VLDTQGVKDR KQSRSKYGAK
     RPK
//

If you have problems or comments...

PBIL Back to PBIL home page