(data stored in SCRATCH zone)

SWISSPROT: D4YYM9_SPHJU

ID   D4YYM9_SPHJU            Unreviewed;       251 AA.
AC   D4YYM9;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   16-JAN-2019, entry version 44.
DE   RecName: Full=50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906};
GN   Name=rplC {ECO:0000256|HAMAP-Rule:MF_01325,
GN   ECO:0000313|EMBL:BAI95461.1};
GN   OrderedLocusNames=SJA_C1-06270 {ECO:0000313|EMBL:BAI95461.1};
OS   Sphingobium japonicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26
OS   / NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95461.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95461.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S
RC   {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: One of the primary rRNA binding proteins, it binds
CC       directly near the 3'-end of the 23S rRNA, where it nucleates
CC       assembly of the 50S subunit. {ECO:0000256|HAMAP-Rule:MF_01325,
CC       ECO:0000256|RuleBase:RU003906}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with
CC       proteins L14 and L19. {ECO:0000256|HAMAP-Rule:MF_01325,
CC       ECO:0000256|RuleBase:RU003906}.
CC   -!- PTM: Methylated by PrmB. {ECO:0000256|HAMAP-Rule:MF_01325}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL3 family.
CC       {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003905}.
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DR   EMBL; AP010803; BAI95461.1; -; Genomic_DNA.
DR   RefSeq; WP_007686585.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-06270; -.
DR   EnsemblBacteria; BAI95461; BAI95461; SJA_C1-06270.
DR   GeneID; 29272300; -.
DR   KEGG; sjp:SJA_C1-06270; -.
DR   eggNOG; ENOG4105EEE; Bacteria.
DR   eggNOG; COG0087; LUCA.
DR   HOGENOM; HOG000100368; -.
DR   KO; K02906; -.
DR   OMA; KGMRMAG; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   HAMAP; MF_01325_B; Ribosomal_L3_B; 1.
DR   InterPro; IPR000597; Ribosomal_L3.
DR   InterPro; IPR019927; Ribosomal_L3_bac/org-type.
DR   InterPro; IPR019926; Ribosomal_L3_CS.
DR   InterPro; IPR009000; Transl_B-barrel_sf.
DR   PANTHER; PTHR11229; PTHR11229; 1.
DR   Pfam; PF00297; Ribosomal_L3; 1.
DR   SUPFAM; SSF50447; SSF50447; 1.
DR   TIGRFAMs; TIGR03625; L3_bact; 1.
DR   PROSITE; PS00474; RIBOSOMAL_L3; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YYM9.
DR   SWISS-2DPAGE; D4YYM9.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Methylation {ECO:0000256|HAMAP-Rule:MF_01325};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01325,
KW   ECO:0000256|RuleBase:RU003905};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01325,
KW   ECO:0000256|RuleBase:RU003905, ECO:0000313|EMBL:BAI95461.1};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01325,
KW   ECO:0000256|RuleBase:RU003906};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01325,
KW   ECO:0000256|RuleBase:RU003906}.
FT   MOD_RES     151    151       N5-methylglutamine. {ECO:0000256|HAMAP-
FT                                Rule:MF_01325}.
SQ   SEQUENCE   251 AA;  26756 MW;  6AE0C192F748E481 CRC64;
     MRTGVIAKKV GMTRLFQEDG RHIPVTVLAL EGNQVVARKE VERDGYVAVQ LGAGVAKVKN
     VAKPQRGHFA KAEVEPKARL VEFRVAEDAL LDVGAEIAAD HFIAGQLVDV AGHTQGKGFA
     GAMKRWGFGG MRATHGVSIS HRAHGSTGNR QDPGRVFKNK KMAGHMGDRE RTQQNLEIVR
     TDVERGLLFV KGSVPGAKGT WLTVCDAVKV KRPADAPYPA SLKQAANSNN APAETPAEEA
     AAPEATEGQE G
//

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