(data stored in ACNUC1829 zone)

EMBL: BC019402

ID   BC019402; SV 1; linear; mRNA; STD; SYN; 1310 BP.
XX
AC   BC019402;
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DT   04-JAN-2002 (Rel. 70, Created)
DT   06-SEP-2016 (Rel. 129, Last updated, Version 13)
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DE   Synthetic construct Mus musculus CD37 antigen, mRNA (cDNA clone MGC:25436
DE   IMAGE:4013070), complete cds.
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KW   MGC.
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OS   synthetic construct
OC   other sequences; artificial sequences.
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RN   [1]
RP   1-1310
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1310
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (19-DEC-2001) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   MD5; 1ffa696479ea9441a1e4ddd81fcfa1fa.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Gilbert Smith, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Baylor College of Medicine Human Genome
CC   Sequencing Center
CC   Center code: BCM-HGSC
CC   Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC   Contact: amg@bcm.tmc.edu
CC   Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC   Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC   A.N., Gibbs, R.A.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 30 Row: i Column: 24
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 31982470.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 37) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1310
FT                   /organism="synthetic construct"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /isolation_source="Mus musculus; Czech II; Mammary tumor
FT                   metastatized to lung. MMTV-LTR/Wnt1 model. Expression
FT                   driven by an MMTV-LTR enhancer."
FT                   /clone_lib="NCI_CGAP_Lu30"
FT                   /clone="MGC:25436 IMAGE:4013070"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:32630"
FT   gene            1..1310
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT   misc_difference 1..36
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="36 bases at the 5' end do not align to the mouse
FT                   genome."
FT   misc_difference 67
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="'A' in cDNA is 'G' in the mouse genome."
FT   CDS_pept        149..994
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /product="CD37 antigen"
FT                   /db_xref="GOA:Q61470"
FT                   /db_xref="InterPro:IPR000301"
FT                   /db_xref="InterPro:IPR008952"
FT                   /db_xref="InterPro:IPR018499"
FT                   /db_xref="InterPro:IPR018503"
FT                   /db_xref="MGI:MGI:88330"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q61470"
FT                   /protein_id="AAH19402.1"
FT                   /translation="MSAQESCLSLIKYFLFVFNLFFFVLGGLIFCFGTWILIDKTSFVS
FT                   FVGLSFVPLQTWSKVLAVSGVLTMALALLGCVGALKELRCLLGLYFGMLLLLFATQITL
FT                   GILISTQRVRLERRVQELVLRTIQSYRTNPDETAAEESWDYAQFQLRCCGWQSPRDWNK
FT                   AQMLKANESEEPFVPCSCYNSTATNDSTVFDKLFFSQLSRLGPRAKLRQTADICALPAK
FT                   AHIYREGCAQSLQKWLHNNIISIVGICLGVGLLELGFMTLSIFLCRNLDHVYDRLARYR
FT                   "
FT   misc_difference 475
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="'T' in cDNA is 'C' in the mouse genome; no amino
FT                   acid change."
FT   misc_difference 521
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="'C' in cDNA is 'A' in the mouse genome; no amino
FT                   acid change."
FT   misc_difference 817
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="'C' in cDNA is 'T' in the mouse genome; no amino
FT                   acid change."
FT   misc_difference 1009
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="'G' in cDNA is 'A' in the mouse genome."
FT   misc_difference 1122
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="'T' in cDNA is 'C' in the mouse genome."
FT   misc_difference 1264..1310
FT                   /gene="Cd37"
FT                   /gene_synonym="Tspan26"
FT                   /note="polyA tail: 47 bases do not align to the mouse
FT                   genome."
XX
SQ   Sequence 1310 BP; 261 A; 402 C; 323 G; 324 T; 0 other;
     cggacgcgtg ggcggacgcg tgggcggacg cgtgggcttt gtgcctctca gtctctgtct        60
     ttctttaccc actattcccc ttcccccctg cggccaacac ctcttctgtc tgggtttctc       120
     gagtgggtca ttccccatct aggcgaagat gtccgcccaa gagagttgcc tcagcctcat       180
     caagtacttc ctcttcgttt tcaacctctt cttctttgta ctaggcggcc tgattttctg       240
     cttcggcacc tggatcctca ttgacaagac cagcttcgtg tcctttgtgg gtttgtcctt       300
     cgtgccactg cagacttggt ccaaggtcct ggctgtctca ggtgtcctca ccatggccct       360
     ggctctcctg ggctgtgtgg gggctctaaa ggagctgcgc tgtctcctgg gcctgtattt       420
     tggaatgctg ctgctcctgt ttgccacaca gattaccctg ggcatcctca tttctactca       480
     gcgggtccgg ctggagcgaa gggtgcagga attggtgttg cggacgatcc agagctaccg       540
     cacgaatccg gatgagacag cagccgagga gagttgggac tatgcacagt tccagctgcg       600
     ctgctgcggc tggcaatctc cgcgggactg gaacaaggcc cagatgctga aagcgaacga       660
     gtctgaggag ccctttgtgc cctgctcctg ctacaactcc acggcgacca atgactccac       720
     cgtctttgat aagctctttt tctcccagct aagccggttg gggccgcggg cgaagctgag       780
     gcagactgct gacatatgtg cactccctgc aaaagcccac atctaccgtg agggctgcgc       840
     gcagagcctc cagaagtggc tgcacaacaa tatcatctcc atagtgggaa tctgtctggg       900
     agtcggtctt cttgagctcg gcttcatgac gctctcaata ttcctgtgta gaaatctgga       960
     tcacgtctat gaccggctgg cccggtaccg ctaggcccca gcccacccgt cggcacccac      1020
     gcacctccat gcagtcagga aatgtttcct tcctggttgg tcacaggctt ggagcccatg      1080
     cctcaggcct catcccctgg ggacccagct gtctgcccta ttgacagcct tcactttccc      1140
     cacatggcca gggacttttg tgcccagctt ccttcccttc ctggctccct cctccccaca      1200
     ccatctgtct gccacctccc acatgacacc tcaaataaat cccctttggg tttttggctt      1260
     tttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa                 1310
//

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