(data stored in ACNUC23583 zone)

EMBL: BC027309

ID   BC027309; SV 1; linear; mRNA; STD; MUS; 2747 BP.
XX
AC   BC027309;
XX
DT   09-APR-2002 (Rel. 71, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 17)
XX
DE   Mus musculus leucine rich repeat containing 61, mRNA (cDNA clone MGC:28139
DE   IMAGE:3981816), complete cds.
XX
KW   MGC.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-2747
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2747
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (04-APR-2002) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   MD5; f9305a6a29b584c077bdbffd9328d52b.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Gilbert Smith, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Baylor College of Medicine Human Genome
CC   Sequencing Center
CC   Center code: BCM-HGSC
CC   Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC   Contact: amg@bcm.tmc.edu
CC   Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC   Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC   A.N., Gibbs, R.A.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 36 Row: e Column: 19
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 31343159.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2747
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="FVB/N"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Mam1"
FT                   /clone="MGC:28139 IMAGE:3981816"
FT                   /tissue_type="Mammary tumor. Metallothionien-TGF alpha
FT                   model. 10 month old virgin mouse. Taken by biopsy."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            1..2747
FT                   /gene="Lrrc61"
FT                   /note="synonym: MGC28139"
FT   misc_difference 98
FT                   /gene="Lrrc61"
FT                   /note="'C' in cDNA is 'T' in the mouse genome."
FT   CDS_pept        280..1059
FT                   /codon_start=1
FT                   /gene="Lrrc61"
FT                   /product="leucine rich repeat containing 61"
FT                   /db_xref="GOA:Q8R2R5"
FT                   /db_xref="InterPro:IPR001611"
FT                   /db_xref="InterPro:IPR032675"
FT                   /db_xref="MGI:MGI:2652848"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8R2R5"
FT                   /protein_id="AAH27309.1"
FT                   /translation="MEPPGEKPGEAEALSITPQLLKSHSGEFALDSILLLKLRGLGVVD
FT                   LGCLGECLNLEWLDLSGNALTHLGPLASLRQLAVLNVSNNRLTGLEPLAACENLQSLNA
FT                   AGNLLTTPGQLQCLAGLQALEHLRLRDPLARLSNPLCANASYWAVVRELLPGLKVIDGE
FT                   RVSGRGSELYQLCRDLDSSLRSGSSPGPRAIEAQPWVEPGYWESWPIRSSSILEEACRQ
FT                   FQDTLQECLDLDRQASDSLAQAQQALSPAETTSSFVF"
FT   misc_difference 640
FT                   /gene="Lrrc61"
FT                   /note="'C' in cDNA is 'T' in the mouse genome; no amino
FT                   acid change."
FT   misc_difference 731
FT                   /gene="Lrrc61"
FT                   /note="'G' in cDNA is 'A' in the mouse genome; amino acid
FT                   difference: 'R' in cDNA, 'Q' in the mouse genome."
FT   misc_difference 1188..1189
FT                   /gene="Lrrc61"
FT                   /note="in the mouse genome : TT."
FT   misc_difference 1421
FT                   /gene="Lrrc61"
FT                   /note="'G' in cDNA is 'A' in the mouse genome."
FT   misc_difference 1455
FT                   /gene="Lrrc61"
FT                   /note="'T' in cDNA is 'C' in the mouse genome."
FT   misc_difference 1497
FT                   /gene="Lrrc61"
FT                   /note="'C' in cDNA is 'A' in the mouse genome."
FT   misc_difference 1501^1502
FT                   /gene="Lrrc61"
FT                   /note="1 base in the mouse genome, G, is not found in
FT                   cDNA."
FT   misc_difference 1515..1516
FT                   /gene="Lrrc61"
FT                   /note="2 bases in cDNA are not found in the mouse genome."
FT   misc_difference 1540
FT                   /gene="Lrrc61"
FT                   /note="'C' in cDNA is 'T' in the mouse genome."
FT   misc_difference 1573
FT                   /gene="Lrrc61"
FT                   /note="'A' in cDNA is 'G' in the mouse genome."
FT   misc_difference 1628^1629
FT                   /gene="Lrrc61"
FT                   /note="3 bases in the mouse genome, AGA, are not found in
FT                   cDNA."
FT   misc_difference 2184
FT                   /gene="Lrrc61"
FT                   /note="'A' in cDNA is 'G' in the mouse genome."
FT   misc_difference 2712..2747
FT                   /gene="Lrrc61"
FT                   /note="polyA tail: 36 bases do not align to the mouse
FT                   genome."
XX
SQ   Sequence 2747 BP; 593 A; 772 C; 702 G; 680 T; 0 other;
     gctttaaccg gtaacaatcg cggccggtga gttatcacgg ggcctgtccc atctctgtcc        60
     gctccatgtt gtcagccgta tctaggcagc caccctccac tcctagagct catcattcct       120
     gaagatctgt tccaaaagaa cttcacactc agttgatgtg cacagacctt tggcccaagc       180
     agaattgagg gagaggagcc agctgatcct cagaggcacc tgcatccctg tgactgacag       240
     cactgccagg gcccagcggt ctgaactgtc ttcagtatca tggagcctcc tggagagaag       300
     ccaggagagg ctgaggcgct gagcatcaca ccccagctgc tgaagtccca ctcaggagaa       360
     tttgccctgg attccatcct gttgctgaag cttcggggtt taggggtggt ggacctgggt       420
     tgtttggggg agtgcctgaa ccttgagtgg cttgacctat caggcaatgc acttacccac       480
     ctgggcccac tggcatccct gcgccagctg gctgtgctca acgtctccaa taatcggctt       540
     acagggctgg agccactagc agcttgtgag aacctgcaga gcctcaatgc tgctggtaac       600
     ctgctgacca ctcctggtca gctgcagtgt ctggctgggc tgcaggccct ggagcacctg       660
     aggctccggg accctttggc ccggctcagc aacccgctct gtgcaaatgc ttcctactgg       720
     gctgtggtcc gagagctact gcctggcctc aaagtcatag atggggaacg agtgagtggg       780
     cggggcagtg agctgtacca gttatgccgg gacctggaca gttccttgcg ctccggctcc       840
     agcccagggc ccagagccat cgaggcccag ccatgggtag agcccggcta ctgggagtcc       900
     tggcccatcc ggagcagctc cattctggag gaggcctgcc gacagttcca ggacacactg       960
     caggaatgcc ttgacctgga tcgtcaggcc agcgatagct tggcccaggc ccagcaggct      1020
     ctcagccctg cagaaaccac ctcttccttt gtcttctgaa tgcaactcat agccaaggtg      1080
     gtctgatcgt agacattcct tccctgcccc atgcgcttgc ctctctctct ctctctctct      1140
     ctctctctct ctctctctgt ctatttatat ctggtcactg accctgcaga ctaggttgtt      1200
     cattcatccg tttcttgaga gctcctaact cctgcatctc ctcaagggtg tttcctccct      1260
     cctcccacag cctcaaggac acactttcca gatcgcctct agaagggaga ggagatcccg      1320
     tcactatctg gcaaatgcac catgcggcca ggctgcaggg gctctgggca tgctgtgcct      1380
     gagctccctc aaatgcccaa cctaaggctt tgtgggtaag gttacttgcc acctgcttac      1440
     tcttatgaaa tagttcagtg ctcatattat cacttgtctc gtctccagca aatacgcggg      1500
     gcttctgaac ctctctgctt tggtcctgtg gaaggctccc acacttgccc tacctgctgc      1560
     ttcctggtac taagcaggaa gtgtggacac acacacacac acacacacac acacacacac      1620
     acacacacgt ctttttgagc ttcccttata tgtacaggtt gagctgaggg agaacaacac      1680
     aaggttggaa aggaacagac tcagcaattt tattagcctg gagttgaaag tctctgggag      1740
     acgatatgct cctgctgggt gctgccacag ctgtacaggg agtaaggtga agtcctagag      1800
     aagaagggaa aaccaggttg ggggtgcggg agactgtttg ggtcagattc tagcttttgt      1860
     cacgtttcac aagtcctttc tcaacccaat ttccatgcca agggctggct ctccccatta      1920
     accacttacc tgtctagggc ttatttggtt ctcagggccc tggagaaggc aaactgtcca      1980
     ggtaggaagt agccgtgggg gtcttcgcca gcctgtgcta tcttaatgca ttgcaactcc      2040
     tgaggatcct gctagaacca gtgtttgctg cagcagttct aggaagggag gcaccgccac      2100
     aacccccagg ggaatgtccc gaggtggggg tggggggacc cagctcttct tttcaggttt      2160
     cctgttcttc tcccatagac ccaaatttga tctgtccctc caggcttctc cctaacctcg      2220
     tttccttctt acctgaggcc cttgcttcag aattgggcag tggactatcc ggcctagaat      2280
     tttacccttg gggtccattt taatgcaggc caggcatttc cgccttctct ggggaggaga      2340
     acagggatgt cagagtggag actagcctct ggcatgctct ggagtgggcg atgtagtgat      2400
     ttgaataaga atgtccccca taggctgaca tatttgaaga tttggtctcc agttggtagt      2460
     gctgtttggg gaggttttga aggtttgacc ttgatggagg aagtacgtca gtggggcagg      2520
     ctttaagatt ttaaaacctc gaaccactcc caattcactc tttctgcgtt ctgtttacga      2580
     ggaaggctgt gagctctcag cttcctgctc tggccaccat gcctgctggc atccacatct      2640
     ccctgcctcc caccatgatg gacttttatt cctctggaac cctaagccaa aataaacctt      2700
     tcctattatt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa                    2747
//

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