(data stored in ACNUC5448 zone)

EMBL: BC058850

ID   BC058850; SV 1; linear; mRNA; STD; MUS; 1622 BP.
XX
AC   BC058850;
XX
DT   10-OCT-2003 (Rel. 77, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 5)
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DE   Mus musculus kalirin, RhoGEF kinase, mRNA (cDNA clone IMAGE:6432820),
DE   partial cds.
XX
KW   .
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-1622
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1622
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-OCT-2003) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   MD5; f605d49d363633a7f5fc6eed17de44fb.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Gerard Gradwohl (PNAS 97 P1607-1611, 2000)
CC   cDNA Library Preparation: Catherine Lee, Endocrine Pancreas
CC   Consortium
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Baylor College of Medicine Human Genome
CC   Sequencing Center
CC   Center code: BCM-HGSC
CC   Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC   Contact: amg@bcm.tmc.edu
CC   Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC   Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC   A.N., Gibbs, R.A.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 111 Row: b Column: 7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1622
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_MGC_137"
FT                   /clone="IMAGE:6432820"
FT                   /tissue_type="Pancreas, pooled libraries Melton normalized
FT                   mixed mouse pancreas 1 N1-MMS1, Amplified Melton mou se
FT                   islets 1 MIS1-A, and Kaestner ngn3 wt."
FT                   /note="Vector: pSPORT1"
FT                   /db_xref="taxon:10090"
FT   gene            <1..1622
FT                   /gene="Kalrn"
FT                   /note="synonyms: DUET, E530005C20Rik, TRAD"
FT   CDS_pept        <1..178
FT                   /codon_start=2
FT                   /gene="Kalrn"
FT                   /product="Kalrn protein"
FT                   /db_xref="GOA:Q6PD97"
FT                   /db_xref="InterPro:IPR028569"
FT                   /db_xref="MGI:MGI:2685385"
FT                   /db_xref="UniProtKB/TrEMBL:Q6PD97"
FT                   /protein_id="AAH58850.1"
FT                   /translation="THASDGVEDGDSQGDGSSQPDTISIASRTSQNTVESDKDGNLVPR
FT                   WHLGPGDPFSTYV"
FT   misc_difference 1..13
FT                   /gene="Kalrn"
FT                   /note="13 bases at the 5' end do not align to the mouse
FT                   genome; Differences found between this sequence and the
FT                   mouse C57BL/6J genome (build 33) are described in
FT                   misc_difference features below"
FT   misc_difference 1598..1622
FT                   /gene="Kalrn"
FT                   /note="polyA tail: 25 bases do not align to the mouse
FT                   genome; Differences found between this sequence and the
FT                   mouse C57BL/6J genome (build 33) are described in
FT                   misc_difference features below"
XX
SQ   Sequence 1622 BP; 414 A; 432 C; 362 G; 414 T; 0 other;
     gacccacgcg tccgatgggg tagaggatgg tgacagccaa ggggatggga gcagccagcc        60
     agataccata tccattgcct ccaggacctc tcagaacaca gtggaaagtg acaaggatgg       120
     caaccttgtt cctcgttggc acctgggacc tggagatcct ttctccactt acgtttagcg       180
     cgcagcctgg gacatgtccc tgcagctcac cgggttagcc gtggcaccgt tgggacctcc       240
     caccaggact ccaatcaccc aactctattg agactgctct gacagggctg gtatggggtg       300
     cagcctttgc tcagagggca acatgttcca agcaaaatct gcccgcctgg gccatgggct       360
     caccccgggc ctccctgctt ctctcctggg tgcaattttg aggtttctga gcttcgatcc       420
     aaagtccaaa atggtggggc aacagggatt taccaagagg ccccagggcc ccatgtactt       480
     ccccagctcc caacctgaca taccagggat tctacccgac ccccactccc gcatcaggcc       540
     ctcactgccc aaaaagtctg caactcaagt agacagggta gataaggggc acatttggtt       600
     ttagtttccc ttcaggttaa acattcctgt gagcagtgac ccccaccccc acccccagtc       660
     tggacaaggc catcccgatg ctgtagctcc tctcctctac atcatgagaa tgtgtggggg       720
     tgggcctgag atacagatgg ggagggtcaa atccagcctt tccccaatac tggcagcagc       780
     cgcctccttc aacacagttc tgtttgatgc agcctcctca ccaccccttt ctgaggtctc       840
     tggggcaaag accaccattc tagtcctatt cacttccagc aatcctgttg ggtggggtgg       900
     ggaatgcacg aagacctaat tgaagccaac tggccacgtg ttgacggtta ttggcactag       960
     atggtacttg ggtgttcagt atacttttct cacttttgta tatgtttcca atttttcata      1020
     ataaattttt ttaaagtcct ccagcttcca taacattcga gaaagaaccc taacccctaa      1080
     gaaagtttca tgggaccccc accctcaccc ccacccccac ccctacacca aggcaagagg      1140
     cagggatgac tccatttcat ataaatagat ataaatataa tataaatata tatatgtaaa      1200
     acactcattt tctaaccttt ttttaaggcc cactgcttta ttttcaataa actaaaccta      1260
     atttctaaga ggtcccgaag ttgggctcac ttcccaggct gggtgatggg gagggcaggg      1320
     aagaggatcc ttaaaagttt acacttccat gtgtctcaca cgcttactgt gagaaagtgg      1380
     cttgttcagt gttctgaact ttgcgaaggg tatatgttcg caatgcacag tgtcattctc      1440
     tggatgtgca cctggctcag gaaaggactg tctttgtact tgaacttaaa tccaatggag      1500
     aaccttaaca cgggcatttg catgactgag atttgctgct gtcttttttc catatgtctc      1560
     tttcttggat gtgttctaat aaaatgattc taaagcaaaa aaaaaaaaaa aaaaaaaaaa      1620
     aa                                                                     1622
//

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