(data stored in SCRATCH zone)

SWISSPROT: C1AT42_RHOOB

ID   C1AT42_RHOOB            Unreviewed;       291 AA.
AC   C1AT42;
DT   26-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   26-MAY-2009, sequence version 1.
DT   07-JUN-2017, entry version 54.
DE   SubName: Full=RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAH48974.1};
GN   OrderedLocusNames=ROP_07270 {ECO:0000313|EMBL:BAH48974.1};
OS   Rhodococcus opacus (strain B4).
OC   Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae;
OC   Rhodococcus.
OX   NCBI_TaxID=632772 {ECO:0000313|EMBL:BAH48974.1, ECO:0000313|Proteomes:UP000002212};
RN   [1] {ECO:0000313|EMBL:BAH48974.1, ECO:0000313|Proteomes:UP000002212}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=B4 {ECO:0000313|EMBL:BAH48974.1,
RC   ECO:0000313|Proteomes:UP000002212};
RA   Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S.,
RA   Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.;
RT   "Comparison of the complete genome sequences of Rhodococcus
RT   erythropolis PR4 and Rhodococcus opacus B4.";
RL   Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS00565917}.
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DR   EMBL; AP011115; BAH48974.1; -; Genomic_DNA.
DR   RefSeq; WP_012687973.1; NC_012522.1.
DR   ProteinModelPortal; C1AT42; -.
DR   STRING; 632772.ROP_07270; -.
DR   EnsemblBacteria; BAH48974; BAH48974; ROP_07270.
DR   KEGG; rop:ROP_07270; -.
DR   PATRIC; fig|632772.20.peg.791; -.
DR   HOGENOM; HOG000220478; -.
DR   KO; K03088; -.
DR   OMA; FERVMKV; -.
DR   OrthoDB; POG091H0AKH; -.
DR   BioCyc; ROPA632772:GH0Q-732-MONOMER; -.
DR   Proteomes; UP000002212; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR032710; NTF2-like_dom.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF54427; SSF54427; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; C1AT42.
DR   SWISS-2DPAGE; C1AT42.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002212};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       11     74       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      111    161       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   291 AA;  31780 MW;  24F9DF2A16639D2A CRC64;
     MDDNEFLAHR FEENRTHLSA VAYRMLGSIS EAEDAVQEGW LRLSRTGTSE VQNLRGWLTT
     VVGRVCLDIL RSRKARREDP LEAHVPDPIV REVDGTDPEY EAVLGDSVGL ALQVVLDTLT
     PAERLAFVLH DMFALSFDEI APIADRTPAA TRQLASRARR RVQGSGPTPD TDPNRQREVV
     EAFMTASRGG RFDDLLALLD PDIVLRADRG ADGSDVVRGA RAVGEQALTF SRFAPFGRLA
     LVNGAPGVVT APDGKTFSVM AFTVAGGRIV RIDILADPVR LQRLRISPGD T
//

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