(data stored in SCRATCH zone)

SWISSPROT: C1E1T7_MICCC

ID   C1E1T7_MICCC            Unreviewed;      1143 AA.
AC   C1E1T7;
DT   26-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   26-MAY-2009, sequence version 1.
DT   30-AUG-2017, entry version 51.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACO61797.1};
GN   ORFNames=MICPUN_56990 {ECO:0000313|EMBL:ACO61797.1};
OS   Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) (Picoplanktonic
OS   green alga).
OC   Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae;
OC   Mamiellales; Mamiellaceae; Micromonas.
OX   NCBI_TaxID=296587 {ECO:0000313|EMBL:ACO61797.1, ECO:0000313|Proteomes:UP000002009};
RN   [1] {ECO:0000313|EMBL:ACO61797.1, ECO:0000313|Proteomes:UP000002009}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RCC299 / NOUM17 {ECO:0000313|Proteomes:UP000002009};
RX   PubMed=19359590; DOI=10.1126/science.1167222;
RA   Worden A.Z., Lee J.H., Mock T., Rouze P., Simmons M.P., Aerts A.L.,
RA   Allen A.E., Cuvelier M.L., Derelle E., Everett M.V., Foulon E.,
RA   Grimwood J., Gundlach H., Henrissat B., Napoli C., McDonald S.M.,
RA   Parker M.S., Rombauts S., Salamov A., Von Dassow P., Badger J.H.,
RA   Coutinho P.M., Demir E., Dubchak I., Gentemann C., Eikrem W.,
RA   Gready J.E., John U., Lanier W., Lindquist E.A., Lucas S., Mayer K.F.,
RA   Moreau H., Not F., Otillar R., Panaud O., Pangilinan J., Paulsen I.,
RA   Piegu B., Poliakov A., Robbens S., Schmutz J., Toulza E., Wyss T.,
RA   Zelensky A., Zhou K., Armbrust E.V., Bhattacharya D., Goodenough U.W.,
RA   Van de Peer Y., Grigoriev I.V.;
RT   "Green evolution and dynamic adaptations revealed by genomes of the
RT   marine picoeukaryotes Micromonas.";
RL   Science 324:268-272(2009).
CC   -!- SIMILARITY: Belongs to the class I-like SAM-binding
CC       methyltransferase superfamily. RNA M5U methyltransferase family.
CC       {ECO:0000256|PROSITE-ProRule:PRU01024}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation
CC       of feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01024}.
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DR   EMBL; CP001324; ACO61797.1; -; Genomic_DNA.
DR   RefSeq; XP_002500539.1; XM_002500493.1.
DR   ProteinModelPortal; C1E1T7; -.
DR   GeneID; 8241730; -.
DR   KEGG; mis:MICPUN_56990; -.
DR   InParanoid; C1E1T7; -.
DR   Proteomes; UP000002009; Chromosome 3.
DR   GO; GO:0030697; F:S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity; IEA:InterPro.
DR   Gene3D; 2.130.10.10; -; 3.
DR   Gene3D; 3.30.40.10; -; 1.
DR   InterPro; IPR030391; MeTrfase_TrmA_CS.
DR   InterPro; IPR029063; SAM-dependent_MTases.
DR   InterPro; IPR011869; TrmA_MeTrfase.
DR   InterPro; IPR010280; U5_MeTrfase_fam.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom.
DR   InterPro; IPR001680; WD40_repeat.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR017986; WD40_repeat_dom.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR11061; PTHR11061; 1.
DR   PANTHER; PTHR11061:SF40; PTHR11061:SF40; 1.
DR   Pfam; PF05958; tRNA_U5-meth_tr; 4.
DR   Pfam; PF00400; WD40; 3.
DR   Pfam; PF13639; zf-RING_2; 1.
DR   SMART; SM00184; RING; 1.
DR   SMART; SM00320; WD40; 7.
DR   SUPFAM; SSF50978; SSF50978; 2.
DR   SUPFAM; SSF53335; SSF53335; 4.
DR   PROSITE; PS51687; SAM_MT_RNA_M5U; 1.
DR   PROSITE; PS01231; TRMA_2; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 2.
DR   PROSITE; PS50082; WD_REPEATS_2; 2.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; C1E1T7.
DR   SWISS-2DPAGE; C1E1T7.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002009};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Methyltransferase {ECO:0000256|PROSITE-ProRule:PRU01024};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002009};
KW   S-adenosyl-L-methionine {ECO:0000256|PROSITE-ProRule:PRU01024};
KW   Transferase {ECO:0000256|PROSITE-ProRule:PRU01024};
KW   WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT   DOMAIN      107    416       WD_REPEATS_REGION. {ECO:0000259|PROSITE:
FT                                PS50294}.
FT   REPEAT      151    183       WD. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00221}.
FT   REPEAT      333    374       WD. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00221}.
FT   DOMAIN      518    566       RING-type. {ECO:0000259|PROSITE:PS50089}.
FT   ACT_SITE   1078   1078       Nucleophile. {ECO:0000256|PROSITE-
FT                                ProRule:PRU01024}.
FT   BINDING     948    948       S-adenosyl-L-methionine; via carbonyl
FT                                oxygen. {ECO:0000256|PROSITE-ProRule:
FT                                PRU01024}.
FT   BINDING     969    969       S-adenosyl-L-methionine.
FT                                {ECO:0000256|PROSITE-ProRule:PRU01024}.
FT   BINDING    1053   1053       S-adenosyl-L-methionine.
FT                                {ECO:0000256|PROSITE-ProRule:PRU01024}.
SQ   SEQUENCE   1143 AA;  120880 MW;  1BB2BA10996765A6 CRC64;
     MEDPGAPDWS RCRRVAAIHA HSASVKCVSG GRWPAGHPGE SGRMRGDDSR TTVDGFATAG
     LDGAARVWTL DGTSSSGFRC VAAFGDHTAG VRAVAMPPPR GTGRDRASSS SSSSSGIPRT
     APEMLAATGS YDRTARLWHA SRAVPPVPPL ANGHSDYVLC VSFGPDARTL VTGGADGRIC
     VWDCDDAAAG NPAPAACLRP GSNAAVRSVD ASLPPPSEDE PGDVLSMTGG EDGTLRVFSH
     ASGGGAVCEV VFAGHGGAVT SLALCRGEER GWGSPPRARK ENVPGTRRIR IAAGHDGGVL
     SVHDAALTSE AGGDENARAS VKVKVREAFV GRVHANGAAR ATLLLRPDAR IVASASEDRT
     VRLWNMQKGN CLSVLVGARC TVESVSFSAL GDLLYAGLAD GHVWVYLEES GEEEDDACAG
     GGIERRVIES RLALAMEALR DPKDPRASSA SESERCASGA APSARRFQDA YEEMECDALG
     LLPRVDRSNV ALVGEVAGGS LGGGGFAWSE RGNPTLSCSV CRGELELGFE DPGGDWPAPL
     PCGHVFHARS CLVPWLRHSP ACPLCRANAL GSGEPPPAAC LPVEPKRSCW SSLRARGSRE
     VAGYSGFVPI ESSTMTGDAS STAAEGARGE PVPGGEPAAQ EEIPEYHDPV DASTYSAALD
     AKVAELERLF SPLMQQASIP ILNAKGVDRS VSVRPEVFPS PPLNFRSRCR FQVMWEDAPV
     TAESTGITPG ESVEPGRRLS YRMWNKGKPT VPITEFPMAL REIEELMPAV LREAEAHPEL
     GDGLQAIHFL ASRGIRGGML VTMVYGRPID EAWKMAAEGP RARLKAAMVD IRERVYGGGD
     DDGFDGFAGP RGDDEELDAT ALNILGRSRG TQIVVGDACH VFETLALRDG RRLRYRQAEG
     AFSNPNSFMA ESTLDWLCDC AATTVREALG GTSEHSAEAA PPSLLELYSG NGNHTVALAK
     YFDSVAAVEL SGVLCEAARE NLERNGVENA KVLHSPSESV ARGMLRRKKR HEEGRVGKAA
     MAAAATGAGD GSKRGDGSGM EFDINAYDVV LVDPPRAGLD PDTLDLVSRF DVVLYISCDP
     RKGLLENAVG PHAARALDTG EFEGEFKGWS GLARTHDLVR FAVFDHFPYT RHIECGACFV
     RRR
//

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